ENSG00000256463


Homo sapiens

Features
Gene ID: ENSG00000256463
  
Biological name :SALL3
  
Synonyms : Q9BXA9 / SALL3 / spalt like transcription factor 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: 1
Band: q23
Gene start: 78980275
Gene end: 79002677
  
Corresponding Affymetrix probe sets: 1553411_s_at (Human Genome U133 Plus 2.0 Array)   230785_at (Human Genome U133 Plus 2.0 Array)   232847_at (Human Genome U133 Plus 2.0 Array)   243672_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000458360
Ensembl peptide - ENSP00000481352
Ensembl peptide - ENSP00000461451
Ensembl peptide - ENSP00000439975
Ensembl peptide - ENSP00000441823
NCBI entrez gene - 27164     See in Manteia.
OMIM - 605079
RefSeq - NM_171999
RefSeq Peptide - NP_741996
swissprot - A0A087WXW6
swissprot - I3L3L8
swissprot - Q9BXA9
Ensembl - ENSG00000256463
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sall3aENSDARG00000079613Danio rerio
 sall3bENSDARG00000057586Danio rerio
 SALL3ENSGALG00000041404Gallus gallus
 Sall3ENSMUSG00000024565Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SALL1 / Q9NSC2 / spalt like transcription factor 1ENSG0000010344953
SALL4 / Q9UJQ4 / spalt like transcription factor 4ENSG0000010111537
SALL2 / Q9Y467 / spalt like transcription factor 2ENSG0000016582125


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR022755  Zinc finger, double-stranded RNA binding
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0006366 transcription by RNA polymerase II IBA
 biological_processGO:0007165 signal transduction IBA
 biological_processGO:0021891 olfactory bulb interneuron development IEA
 biological_processGO:0022008 neurogenesis IBA
 biological_processGO:0035136 forelimb morphogenesis IEA
 biological_processGO:0035137 hindlimb morphogenesis IEA
 biological_processGO:0045879 negative regulation of smoothened signaling pathway IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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