ENSDARG00000074319


Danio rerio

Features
Gene ID: ENSDARG00000074319
  
Biological name :sall1a
  
Synonyms : sall1a / spalt-like transcription factor 1a
  
Possible biological names infered from orthology : Q9NSC2 / SALL1 / spalt like transcription factor 1
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 37359004
Gene end: 37392172
  
Corresponding Affymetrix probe sets: Dr.12380.1.S1_at (Zebrafish Array)   Dr.14305.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000145089
Ensembl peptide - ENSDARP00000157563
Ensembl peptide - ENSDARP00000102655
Ensembl peptide - ENSDARP00000142758
NCBI entrez gene - 555721     See in Manteia.
RefSeq - XM_021477534
swissprot - A0A1D5NSE4
swissprot - F1QI36
ZFIN ID - ZDB-GENE-020228-2
Ensembl - ENSDARG00000074319
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SALL1ENSGALG00000039238Gallus gallus
 SALL1ENSG00000103449Homo sapiens
 Sall1ENSMUSG00000031665Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sall1b / spalt-like transcription factor 1bENSDARG0000007589145
sall3a / spalt-like transcription factor 3a / SALL3* / Q9BXA9* / Q62255* / Sal-like protein 3 * / spalt like transcription factor 3*ENSDARG0000007961343
sall3b / spalt-like transcription factor 3b / SALL3* / Q9BXA9* / Q62255* / Sal-like protein 3 * / spalt like transcription factor 3*ENSDARG0000005758639
sall4 / spalt-like transcription factor 4 / Q9UJQ4*ENSDARG0000004448534
sall2 / spalt-like transcription factor 2 / Q9QX96* / Q9Y467* / Sal-like protein 2 *ENSDARG0000007511615
si:ch211-212k18.5 / SALL2* / Q9Y467* / Q9QX96* / Sal-like protein 2 * / spalt like transcription factor 2*ENSDARG0000010331615


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0006366 transcription by RNA polymerase II IBA
 biological_processGO:0022008 neurogenesis IBA
 biological_processGO:0035118 embryonic pectoral fin morphogenesis IMP
 biological_processGO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway IGI
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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