ENSDARG00000044485


Danio rerio

Features
Gene ID: ENSDARG00000044485
  
Biological name :sall4
  
Synonyms : sall4 / spalt-like transcription factor 4
  
Possible biological names infered from orthology : Q8BX22 / Q9UJQ4 / Sal-like protein 4
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 38940700
Gene end: 38952596
  
Corresponding Affymetrix probe sets: Dr.103.1.S1_at (Zebrafish Array)   Dr.25526.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000065330
swissprot - F1QDF2
ZFIN ID - ZDB-GENE-060328-2
Ensembl - ENSDARG00000044485
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SALL4ENSGALG00000041365Gallus gallus
 SALL4ENSG00000101115Homo sapiens
 Sall4ENSMUSG00000027547Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sall3a / spalt-like transcription factor 3a / SALL3* / Q9BXA9* / Q62255* / Sal-like protein 3 * / spalt like transcription factor 3*ENSDARG0000007961342
sall1a / spalt-like transcription factor 1a / SALL1* / Q9NSC2* / spalt like transcription factor 1*ENSDARG0000007431941
sall3b / spalt-like transcription factor 3b / SALL3* / Q9BXA9* / Q62255* / Sal-like protein 3 * / spalt like transcription factor 3*ENSDARG0000005758638
sall1b / spalt-like transcription factor 1bENSDARG0000007589133
sall2 / spalt-like transcription factor 2 / Q9QX96* / Q9Y467* / Sal-like protein 2 *ENSDARG0000007511617
si:ch211-212k18.5 / SALL2* / Q9Y467* / Q9QX96* / Sal-like protein 2 * / spalt like transcription factor 2*ENSDARG0000010331616


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0006366 transcription by RNA polymerase II IBA
 biological_processGO:0022008 neurogenesis IBA
 biological_processGO:0035118 embryonic pectoral fin morphogenesis IMP
 biological_processGO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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