ENSG00000104313


Homo sapiens

Features
Gene ID: ENSG00000104313
  
Biological name :EYA1
  
Synonyms : EYA1 / EYA transcriptional coactivator and phosphatase 1 / Q99502
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q13.3
Gene start: 71197433
Gene end: 71592025
  
Corresponding Affymetrix probe sets: 1569736_at (Human Genome U133 Plus 2.0 Array)   214608_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494888
Ensembl peptide - ENSP00000494568
Ensembl peptide - ENSP00000495390
Ensembl peptide - ENSP00000496702
Ensembl peptide - ENSP00000496700
Ensembl peptide - ENSP00000496255
Ensembl peptide - ENSP00000496188
Ensembl peptide - ENSP00000303221
Ensembl peptide - ENSP00000342626
Ensembl peptide - ENSP00000373392
Ensembl peptide - ENSP00000373393
Ensembl peptide - ENSP00000373394
Ensembl peptide - ENSP00000373395
Ensembl peptide - ENSP00000410176
Ensembl peptide - ENSP00000428391
Ensembl peptide - ENSP00000428517
Ensembl peptide - ENSP00000494438
NCBI entrez gene - 2138     See in Manteia.
OMIM - 601653
RefSeq - XM_017013213
RefSeq - XM_011517484
RefSeq - XM_017013201
RefSeq - XM_017013202
RefSeq - XM_017013203
RefSeq - XM_017013204
RefSeq - XM_017013205
RefSeq - XM_017013206
RefSeq - XM_017013207
RefSeq - XM_017013208
RefSeq - XM_017013209
RefSeq - XM_017013210
RefSeq - XM_017013211
RefSeq - XM_017013212
RefSeq - NM_000503
RefSeq - NM_001288574
RefSeq - NM_001288575
RefSeq - NM_172058
RefSeq - NM_172059
RefSeq - NM_172060
RefSeq - XM_011517483
RefSeq Peptide - NP_001275503
RefSeq Peptide - NP_001275504
RefSeq Peptide - NP_742055
RefSeq Peptide - NP_742056
RefSeq Peptide - NP_742057
RefSeq Peptide - NP_000494
swissprot - Q99502
swissprot - A0A024R813
swissprot - E5RIQ7
swissprot - E5RHZ7
swissprot - A6NCB9
swissprot - F8WB53
swissprot - E7EQM5
Ensembl - ENSG00000104313
  
Related genetic diseases (OMIM): 113650 - Branchiootorenal syndrome 1, with or without cataracts, 113650
  166780 - ?Otofaciocervical syndrome, 166780
  602588 - Anterior segment anomalies with or without cataract, 602588
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 eya1ENSDARG00000014259Danio rerio
 EYA1ENSGALG00000043033Gallus gallus
 Eya1ENSMUSG00000025932Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EYA4 / O95677 / EYA transcriptional coactivator and phosphatase 4ENSG0000011231973
EYA2 / O00167 / EYA transcriptional coactivator and phosphatase 2ENSG0000006465558
EYA3 / Q99504 / EYA transcriptional coactivator and phosphatase 3ENSG0000015816139


Protein motifs (from Interpro)
Interpro ID Name
 IPR006545  EYA domain
 IPR028471  Eyes absent homologue 1
 IPR028472  Eyes absent family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001656 metanephros development IEA
 biological_processGO:0001657 ureteric bud development IEA
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0003151 outflow tract morphogenesis IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006302 double-strand break repair IMP
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006470 protein dephosphorylation IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0007501 mesodermal cell fate specification IEA
 biological_processGO:0007605 sensory perception of sound TAS
 biological_processGO:0009653 anatomical structure morphogenesis TAS
 biological_processGO:0009887 animal organ morphogenesis IEA
 biological_processGO:0010212 response to ionizing radiation IDA
 biological_processGO:0014706 striated muscle tissue development IEA
 biological_processGO:0016576 histone dephosphorylation IDA
 biological_processGO:0016925 protein sumoylation ISS
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0035335 peptidyl-tyrosine dephosphorylation IEA
 biological_processGO:0035909 aorta morphogenesis IEA
 biological_processGO:0042471 ear morphogenesis IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0042473 outer ear morphogenesis IEA
 biological_processGO:0042474 middle ear morphogenesis IEA
 biological_processGO:0045165 cell fate commitment IEA
 biological_processGO:0045664 regulation of neuron differentiation IEA
 biological_processGO:0045739 positive regulation of DNA repair IMP
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048665 neuron fate specification IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0048752 semicircular canal morphogenesis IEA
 biological_processGO:0048856 anatomical structure development IEA
 biological_processGO:0050679 positive regulation of epithelial cell proliferation IEA
 biological_processGO:0060037 pharyngeal system development IEA
 biological_processGO:0071599 otic vesicle development IEA
 biological_processGO:0071600 otic vesicle morphogenesis IEA
 biological_processGO:0072513 positive regulation of secondary heart field cardioblast proliferation IEA
 biological_processGO:0090103 cochlea morphogenesis IEA
 biological_processGO:2001240 negative regulation of extrinsic apoptotic signaling pathway in absence of ligand IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0032993 protein-DNA complex IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0004725 protein tyrosine phosphatase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000074 Ureteropelvic junction obstruction 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000104 Renal agenesis 
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 HP:0000110 Renal dysplasia 
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 HP:0000113 Polycystic kidney 
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 HP:0000126 Hydronephrosis 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000275 Narrow face 
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 HP:0000276 Long face 
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 HP:0000278 Retrognathia 
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 HP:0000293 Full cheeks 
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 HP:0000324 Facial asymmetry 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000376 Mondini malformation "The normal cochlea has two and one half turns. Mondini malformation refers to the development of only one and a half turns of the cochlea. The defect usually occurs in the seventh week of gestation after development of the basal turn. There is incomplete partition with resulting confluency of the middle and apical turns." [HPO:curators]
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 HP:0000378 Cup-shaped ears "Small auricles that grow forward over the meatus (ear canal)." [HPO:curators]
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 HP:0000384 Preauricular skin tag "A rudimentary tag of ear tissue often containing a core of cartilage and located just in front of the auricle (outer part of the ear)." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000402 Stenotic external auditory canal "An abnormal narrowing of the external auditory canal." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000410 Mixed hearing loss 
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 HP:0000411 Protruding ears 
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 HP:0000413 External auditory canal atresia "Absence or failure to form of the external auditory canal." [HPO:curators]
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 HP:0000460 Narrow nose 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000472 Long neck 
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 HP:0000614 Abnormality of the lacrimal duct 
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 HP:0000632 Lacrimation abnormality 
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 HP:0000691 Microdontia 
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 HP:0000799 Fatty kidneys 
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 HP:0000889 Abnormality of the clavicles "Any abnormality of the clavicles (collar bones)." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001374 Congenital hip dislocation 
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 HP:0001425 Heterogeneous 
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 HP:0002060 Abnormality of the cerebrum 
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 HP:0002167 Neurological speech impairment 
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 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0003691 Scapular winging 
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004452 Abnormality of the middle ear ossicles "An abnormality of the middle-ear ossicles (three small bones called malleus, incus, and stapes) that are contained within the middle ear and serve to transmit sounds from the air to the fluid-filled labyrinth (cochlea)." [HPO:curators]
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 HP:0004458 bulbous internal auditory canal 
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 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
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 HP:0004712 Malrotation of the kidney 
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 HP:0004742 Abnormality of the renal collecting system 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0007477 Abnormal dermatoglyphics "An abnormality of dermatoglyphs (fingerprints), which are present on fingers, palms, toes, and soles." [HPO:curators]
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 HP:0007678 Nasolacrimal duct stenosis 
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 HP:0007925 Lacrimal duct aplasia or stenosis 
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 HP:0008551 Underdeveloped ears 
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 HP:0008554 Cochlear malformation "A cochlear malformation may include a membranous abnormality, a bony abnormality, or a combination of the two." [HPO:curators]
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 HP:0008572 External ear malformation 
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 HP:0008586 Hypoplastic cochlea 
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 HP:0008609 Middle ear malformations 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0009738 Abnormal antihelix "An abnormal form of the antihelix, which is the curved prominence of cartilage, parallel with and in front of the helix, and which divides into the crura antihelicis, between which is a triangular depression, the fossa triangularis." [HPO:curators]
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 HP:0009795 Branchial fistula "A congenital fistula in the neck resulting from incomplete closure of a branchial cleft." [HPO:curators]
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 HP:0009796 Branchial cyst "A branchial cyst is a remnant of embryonic development resulting from a failure of obliteration of the second branchial cleft and consists of a subcutaneous cystic mass located between the sternocleidomastoid muscle and the pharynx." [HPO:curators]
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 HP:0009797 Cholesteatoma "Cholesteatoma is a benign but potentially destructive growth consisting of keratinizing epithelium located in the middle ear and/or mastoid process." [HPO:curators]
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 HP:0009798 Euthyroid goiter "A goiter (enlargement of the thyroid gland) that is not associated with functional thyroid abnormalities." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011094 Overbite "Maxillary teeth cover the mandibular teeth when biting to an increased degree." [HPO:ibailleulforestier]
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 HP:0011388 Enlarged cochlear aqueduct "Increased size of the `cochlear duct` (FMA:61119), i.e., of a duct that communicates between the perilymphatic space and the subarachnoid space, and transmits a vein from the cochlea to join the internal jugular." [DDD:dfitzpatrick]
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 HP:0011481 Abnormality of the lacrimal duct "An abnormality of the ` lacrimal duct` (FMA:61063), a duct that drain tears from the conjunctiva, via the lacrimal puncta, into the lacrimal sac." [HPO:probinson]
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 HP:0100267 Lip pits 
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 HP:0100274 Gustatory lacrimation "Gustatory lacrimation results from an aberrant innervation of fibres from the seventh cranial nerve to the pterygopalatine ganglion which are destined originally for the submandibular ganglion. This aberrant innervation leads to uncontrollable tearing while eating or in anticipation of a meal." [HPO:sdoelken]
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 HP:0200021 Rounded shoulders 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000149311 ATM / Q13315 / ATM serine/threonine kinase  / reaction






 

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