ENSG00000106003


Homo sapiens

Features
Gene ID: ENSG00000106003
  
Biological name :LFNG
  
Synonyms : LFNG / LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase / Q8NES3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: p22.3
Gene start: 2512529
Gene end: 2529177
  
Corresponding Affymetrix probe sets: 215270_at (Human Genome U133 Plus 2.0 Array)   228762_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000385764
Ensembl peptide - ENSP00000384786
Ensembl peptide - ENSP00000483986
Ensembl peptide - ENSP00000222725
Ensembl peptide - ENSP00000343095
Ensembl peptide - ENSP00000352579
NCBI entrez gene - 3955     See in Manteia.
OMIM - 602576
RefSeq - NM_001040167
RefSeq - NM_001040168
RefSeq - NM_001166355
RefSeq - NM_002304
RefSeq Peptide - NP_001035257
RefSeq Peptide - NP_001035258
RefSeq Peptide - NP_001159827
RefSeq Peptide - NP_002295
swissprot - Q8NES3
swissprot - A0A087X191
Ensembl - ENSG00000106003
  
Related genetic diseases (OMIM): 609813 - ?Spondylocostal dysostosis 3, autosomal recessive, 609813
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lfngENSDARG00000037879Danio rerio
 LFNGENSGALG00000038515Gallus gallus
 LfngENSMUSG00000029570Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RFNG / Q9Y644 / RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferaseENSG0000016973351
MFNG / O00587 / MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferaseENSG0000010006049


Protein motifs (from Interpro)
Interpro ID Name
 IPR003378  Fringe-like
 IPR017374  Fringe


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001541 ovarian follicle development IEA
 biological_processGO:0001756 somitogenesis ISS
 biological_processGO:0002315 marginal zone B cell differentiation ISS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007386 compartment pattern specification IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0008593 regulation of Notch signaling pathway ISS
 biological_processGO:0009887 animal organ morphogenesis NAS
 biological_processGO:0014807 regulation of somitogenesis IMP
 biological_processGO:0030217 T cell differentiation ISS
 biological_processGO:0032092 positive regulation of protein binding IEA
 biological_processGO:0036066 protein O-linked fucosylation ISS
 biological_processGO:0045747 positive regulation of Notch signaling pathway IEA
 biological_processGO:0051446 positive regulation of meiotic cell cycle IEA
 biological_processGO:1902367 negative regulation of Notch signaling pathway involved in somitogenesis ISS
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005576 extracellular region NAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030173 integral component of Golgi membrane IEA
 cellular_componentGO:1903561 extracellular vesicle HDA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0033829 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Pre-NOTCH Processing in Golgi
Defective LFNG causes SCDO3


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000008 Abnormality of female internal genitalia 
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 HP:0000023 Inguinal hernia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000069 Abnormality of the ureters "An abnormality of the ureters, the ductal organs that transport urine from the kidneys to the urinary bladder." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000269 Prominent occiput 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000902 Rib fusion 
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 HP:0001238 Slender fingers "Digits are disproportionaly narrow (reduced girth)." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002435 Meningocele 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0003298 Spina bifida occulta "The closed form of spina bifida." [HPO:curators]
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 HP:0003312 Abnormal form of the vertebral bodies 
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 HP:0003422 Vertebral segmentation defects 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004598 platyspondyly with multiple extra ossification centers 
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 HP:0005108 Abnormality of the intervertebral disks 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006655 Rib segmentation abnormalities 
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 HP:0010306 Short thorax "Reduced inferior to superior extent of the thorax." [HPO:curators]
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 HP:0010772 Anomalous pulmonary venous return "A developmental defect characterized by abnormal connection of or more pulmonary veins to the superior or inferior vena cava, the right atrium, or the coronary sinus, resulting in a left-to-right shunt of oxygenated blood." [HPO:probinson]
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 HP:0010978 Abnormality of immune system physiology "A functional abnormality of the `immune system` (FMA:9825)." [HPO:probinson, MP:0001790]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100589 Urogenital fistula "The presence of a `fistula` (MPATH:70) affecting the `genitourinary system` (FMA:280610)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000148400 NOTCH1 / P46531  / reaction






 

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