ENSG00000106246


Homo sapiens

Features
Gene ID: ENSG00000106246
  
Biological name :PTCD1
  
Synonyms : O75127 / pentatricopeptide repeat domain 1 / PTCD1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q22.1
Gene start: 99416739
Gene end: 99466163
  
Corresponding Affymetrix probe sets: 218956_s_at (Human Genome U133 Plus 2.0 Array)   222796_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000292478
Ensembl peptide - ENSP00000408059
Ensembl peptide - ENSP00000401600
Ensembl peptide - ENSP00000390530
NCBI entrez gene - 26024     See in Manteia.
OMIM - 614774
RefSeq - NM_015545
RefSeq Peptide - NP_056360
swissprot - A4D273
swissprot - C9JWL7
swissprot - O75127
swissprot - C9JQN9
swissprot - C9JGL8
Ensembl - ENSG00000106246
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ptcd1ENSDARG00000076176Danio rerio
 ENSGALG00000004711Gallus gallus
 Ptcd1ENSMUSG00000029624Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ATP5MF-PTCD1 / ATP5MF-PTCD1 readthroughENSG00000248919100


Protein motifs (from Interpro)
Interpro ID Name
 IPR002885  Pentatricopeptide repeat
 IPR033443  Pentacotripeptide-repeat region of PRORP


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0042780 tRNA 3"-end processing IDA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix ISS
 molecular_functionGO:0000049 tRNA binding IDA
 molecular_functionGO:0003723 RNA binding HDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr