ENSMUSG00000029624


Mus musculus

Features
Gene ID: ENSMUSG00000029624
  
Biological name :Ptcd1
  
Synonyms : Pentatricopeptide repeat-containing protein 1, mitochondrial / Ptcd1 / Q8C2E4
  
Possible biological names infered from orthology : ATP5MF-PTCD1 / ATP5MF-PTCD1 readthrough / O75127 / pentatricopeptide repeat domain 1
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: G2
Gene start: 145147514
Gene end: 145167108
  
Corresponding Affymetrix probe sets: 10535637 (MoGene1.0st)   1416391_at (Mouse Genome 430 2.0 Array)   1425096_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000125276
Ensembl peptide - ENSMUSP00000031628
NCBI entrez gene - 71799     See in Manteia.
MGI - MGI:1919049
RefSeq - NM_133735
RefSeq Peptide - NP_598496
swissprot - E0CXI1
swissprot - Q8C2E4
Ensembl - ENSMUSG00000029624
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ptcd1ENSDARG00000076176Danio rerio
 ENSGALG00000004711Gallus gallus
 ATP5MF-PTCD1ENSG00000248919Homo sapiens
 PTCD1ENSG00000106246Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002885  Pentatricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0042780 tRNA 3"-end processing ISS
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix ISS
 molecular_functionGO:0000049 tRNA binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001261 obese "excessively fat; an increase in fat in the subcutaneous connective tissue" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, cml:Cathleen M. Lutz , Mouse Genome Informatics Curator]
Show

Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0001552 increased circulating triglyceride level "higher than normal concentration of triacylglycerols in the blood" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:65416]
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Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0001625 cardiac hypertrophy "an increase in size of the cardiac tissue, not due to increased cell number " [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0002628 fatty liver "an accumulation of fat deposits in the liver " [pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator]
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Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0002953 thick ventricular wall "increased depth of the cardiac wall of the heart ventricles" [ava:Anna V. Anagnostopoulos , Mouse Genome Informatics Curator]
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Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0003333 liver fibrosis "invasion of fibrous connective tissue into the liver, often resulting from inflammation or injury " [MeSH:National Library of Medicine - Medical Subject Headings , 2003, ncbi:Matthew Mailman, NCBI request]
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Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0005293 impaired glucose tolerance "less than the normal response to oral consumption or intravenous injection of specified amounts of glucose and indicative of insulin resistance; measured by determining whole blood or plasma sugar level in a fasting state before and after taking glucose at specified intervals" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0005331 insulin resistance "diminished effectiveness of insulin in lowering plasma glucose levels" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:84260, pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator]
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Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0005599 increased cardiac muscle contractility "greater than the normal ability of the heart muscle to shorten or to develop increased tension " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, RGD:Rat Genome Database submission]
Show

Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0005669 increased circulating leptin level "greater than the normal blood concentration of the peptide hormone secreted by white adipocytes and believed to regulate food intake and energy balance" [MeSH:National Library of Medicine - Medical Subject Headings, 2003, J:34751]
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Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0006035 abnormal mitochondrial morphology "anomalous structure of the mitochondria" [smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0006036 abnormal mitochondrial physiology 
Show

Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0010580 decreased heart left ventricle size "less than average size of the left ventricle compared to the average for a particular population" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0010724 thick interventricular septum "increased thickness of the wall between the two lower chambers of the heart" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0010959 abnormal oxidative phosphorylation "any anomaly in the process of phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain; oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis" [GO:0006119]
Show

Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0011092 complete embryonic lethality "death of all organisms of a given genotype in a population within the embryonic period prior to organogenesis (Mus: prior to E14)" [MGI:csmith]
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Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

 MP:0011635 abnormal mitochondrial crista morphology "Any of the inward folds of the mitochondrial inner membrane; crista number, extent, and shape differ in mitochondria from different tissues and organisms; crista appear to be devices for increasing the surface area of the mitochondrial inner membrane, where the enzymes of electron transport and oxidative phosphorylation are found; the shape can vary with the respiratory state of the mitochondria" [GO:0030061]
Show

Allelic Composition: Manftm1c(KOMP)Wtsi/Manftm1c(KOMP)Wtsi
Genetic Background: involves: C57BL/6N * FVB/N

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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