ENSG00000107147


Homo sapiens

Features
Gene ID: ENSG00000107147
  
Biological name :KCNT1
  
Synonyms : KCNT1 / potassium sodium-activated channel subfamily T member 1 / Q5JUK3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q34.3
Gene start: 135702185
Gene end: 135795508
  
Corresponding Affymetrix probe sets: 1563608_a_at (Human Genome U133 Plus 2.0 Array)   1569461_at (Human Genome U133 Plus 2.0 Array)   1569462_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000418003
Ensembl peptide - ENSP00000417851
Ensembl peptide - ENSP00000418777
Ensembl peptide - ENSP00000490874
Ensembl peptide - ENSP00000490748
Ensembl peptide - ENSP00000486830
Ensembl peptide - ENSP00000486486
Ensembl peptide - ENSP00000486374
Ensembl peptide - ENSP00000486130
Ensembl peptide - ENSP00000420764
Ensembl peptide - ENSP00000419086
Ensembl peptide - ENSP00000419007
Ensembl peptide - ENSP00000263604
Ensembl peptide - ENSP00000360822
Ensembl peptide - ENSP00000417578
NCBI entrez gene - 57582     See in Manteia.
OMIM - 608167
RefSeq - XM_017014933
RefSeq - NM_001272003
RefSeq - NM_020822
RefSeq - XM_011518877
RefSeq - XM_011518878
RefSeq - XM_011518879
RefSeq - XM_011518880
RefSeq - XM_011518881
RefSeq - XM_017014931
RefSeq - XM_017014932
RefSeq Peptide - NP_065873
RefSeq Peptide - NP_001258932
swissprot - A0A0D9SEY3
swissprot - C9JYL2
swissprot - C9JBV2
swissprot - C9JAX7
swissprot - C9J9Y7
swissprot - A0A1B0GWC7
swissprot - A0A1B0GW26
swissprot - A0A0R4J2E0
swissprot - A0A0D9SFR1
swissprot - F8WC49
swissprot - A0A0D9SFC8
swissprot - Q5JUK3
Ensembl - ENSG00000107147
  
Related genetic diseases (OMIM): 614959 - Epileptic encephalopathy, early infantile, 14, 614959
  615005 - Epilepsy, nocturnal frontal lobe, 5, 615005
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Kcnt1ENSMUSG00000058740Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KCNT2 / Q6UVM3 / potassium sodium-activated channel subfamily T member 2ENSG0000016268772
KCNMA1 / Q12791 / potassium calcium-activated channel subfamily M alpha 1ENSG0000015611318
KCNU1 / A8MYU2 / potassium calcium-activated channel subfamily U member 1ENSG0000021526217


Protein motifs (from Interpro)
Interpro ID Name
 IPR003929  Potassium channel, BK, alpha subunit
 IPR013099  Potassium channel domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006813 potassium ion transport IEA
 biological_processGO:0071805 potassium ion transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0008076 voltage-gated potassium channel complex IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005249 voltage-gated potassium channel activity IBA
 molecular_functionGO:0005267 potassium channel activity IEA
 molecular_functionGO:0015269 calcium-activated potassium channel activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000817 Poor eye contact 
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 HP:0001249 Mental retardation 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002133 Status epilepticus 
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 HP:0002169 Clonus 
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 HP:0002171 Gliosis 
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 HP:0002376 Developmental regression 
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 HP:0002445 Tetraplegia 
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 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
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 HP:0003676 Progressive disorder 
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 HP:0007359 Partial seizures "Recurrent partial `seizures` (HP:0001250). In a partial seizure, the electrical disturbance is limited to one part or side of the brain. That is, partial epilepsies are epileptic disorders in which clinical or laboratory findings disclose a localized origin of seizures." [HPO:curators]
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 HP:0012075 Personality disorder "An abnormality of mental functioning affecting the personality and behavioural tendencies of an individual and characterized by a rigid and unhealthy pattern of thinking and behavior. The definition of a personal disorder implies that the abnormality is not the result of damage or insult to the brain or from another psychiatric disorder." [HPO:probinson]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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