ENSG00000107537


Homo sapiens

Features
Gene ID: ENSG00000107537
  
Biological name :PHYH
  
Synonyms : O14832 / PHYH / phytanoyl-CoA 2-hydroxylase
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: p13
Gene start: 13277796
Gene end: 13302412
  
Corresponding Affymetrix probe sets: 203335_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000420117
Ensembl peptide - ENSP00000263038
Ensembl peptide - ENSP00000380121
Ensembl peptide - ENSP00000380126
Ensembl peptide - ENSP00000412525
NCBI entrez gene - 5264     See in Manteia.
OMIM - 602026
RefSeq - NM_001323080
RefSeq - NM_001037537
RefSeq - NM_001323082
RefSeq - NM_001323083
RefSeq - NM_001323084
RefSeq - NM_006214
RefSeq Peptide - NP_001310013
RefSeq Peptide - NP_006205
RefSeq Peptide - NP_001032626
RefSeq Peptide - NP_001310009
RefSeq Peptide - NP_001310011
RefSeq Peptide - NP_001310012
swissprot - O14832
swissprot - C9IYS5
swissprot - B1ALH6
swissprot - C9JR86
Ensembl - ENSG00000107537
  
Related genetic diseases (OMIM): 266500 - Refsum disease, 266500
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 phyhENSDARG00000086740Danio rerio
 PHYHENSGALG00000035636Gallus gallus
 PhyhENSMUSG00000026664Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008775  Phytanoyl-CoA dioxygenase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001561 fatty acid alpha-oxidation TAS
 biological_processGO:0006103 2-oxoglutarate metabolic process IDA
 biological_processGO:0006631 fatty acid metabolic process IEA
 biological_processGO:0006720 isoprenoid metabolic process IDA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0097089 methyl-branched fatty acid metabolic process IDA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005777 peroxisome IEA
 cellular_componentGO:0005782 peroxisomal matrix TAS
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008198 ferrous iron binding IDA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0031406 carboxylic acid binding IDA
 molecular_functionGO:0031418 L-ascorbic acid binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048037 cofactor binding IDA
 molecular_functionGO:0048244 phytanoyl-CoA dioxygenase activity TAS
 molecular_functionGO:0051213 dioxygenase activity IEA


Pathways (from Reactome)
Pathway description
Alpha-oxidation of phytanate
Peroxisomal protein import
TYSND1 cleaves peroxisomal proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000458 Anosmia "An inability to perceive odors. This is a general term describing inability to smell arising in any part of the process of smelling from absorption of odorants into the nasal mucous overlying the olfactory epithelium, diffusion to the cilia, binding to olfactory receptor sites, generation of action potentials in olfactory neurons, and perception of a smell." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000505 Impaired vision 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000529 Progressive visual loss 
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 HP:0000546 Retinal degeneration 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000616 Miosis 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0000958 Dry skin 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001638 Cardiomyopathy 
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 HP:0001640 Cardiomegaly 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001761 Pes cavus 
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 HP:0001765 Hammer toes 
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 HP:0001939 Metabolism abnormality 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002164 Nail dysplasia 
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 HP:0002376 Developmental regression 
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 HP:0002652 Skeletal dysplasia 
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 HP:0002654 Multiple epiphyseal dysplasia 
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 HP:0002922 Increased CSF protein 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003474 Sensory impairment 
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 HP:0003690 Limb muscle weakness "Weakness of the muscles of the arms and legs." [HPO:curators]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0004689 short fourth metatarsals 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0007141 Sensorimotor neuropathy 
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 HP:0007256 Mild pyramidal signs 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008064 Ichthyosiform abnormality of the skin 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010571 Elevated levels of phytanic acid "An abnormal elevation of phytanic acid (3,7,11,15-tetramethyl hexadecanoic acid), which is a fatty acid that is derived from chlorophyll and present in the diet. The metabolism of phytanic acid involves alpha-oxidation in the peroxisome, which converts phytanic acid to pristanic acid." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0012211 Abnormal renal physiology "Any functional anomaly of the `kidney` (FMA:7203)." [HPO:probinson]
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 HP:0012722 Heart block "Impaired conduction of cardiac impulse occurring anywhere along the conduction pathway." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000108733 PEX12 / O00623 / peroxisomal biogenesis factor 12  / complex / reaction
 ENSG00000157911 PEX10 / O60683 / peroxisomal biogenesis factor 10  / complex / reaction
 ENSG00000142655 PEX14 / O75381 / peroxisomal biogenesis factor 14  / reaction / complex
 ENSG00000162928 PEX13 / Q92968 / peroxisomal biogenesis factor 13  / reaction / complex
 ENSG00000139197 PEX5 / P50542 / peroxisomal biogenesis factor 5  / reaction / complex
 ENSG00000164751 PEX2 / P28328 / peroxisomal biogenesis factor 2  / complex / reaction
 ENSG00000156521 Q2T9J0 / TYSND1 / trypsin domain containing 1  / reaction
 ENSG00000112357 PEX7 / O00628 / peroxisomal biogenesis factor 7  / reaction / complex






 

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