ENSG00000107566


Homo sapiens

Features
Gene ID: ENSG00000107566
  
Biological name :ERLIN1
  
Synonyms : ERLIN1 / ER lipid raft associated 1 / O75477
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q24.31
Gene start: 100150094
Gene end: 100188334
  
Corresponding Affymetrix probe sets: 202441_at (Human Genome U133 Plus 2.0 Array)   202444_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000384900
Ensembl peptide - ENSP00000410964
Ensembl peptide - ENSP00000359436
NCBI entrez gene - 10613     See in Manteia.
OMIM - 611604
RefSeq - XM_017015541
RefSeq - NM_001100626
RefSeq - NM_006459
RefSeq - XM_005269442
RefSeq Peptide - NP_001094096
RefSeq Peptide - NP_001334786
RefSeq Peptide - NP_001334788
RefSeq Peptide - NP_001334789
RefSeq Peptide - NP_001334790
RefSeq Peptide - NP_006450
swissprot - D3DR65
swissprot - O75477
swissprot - B0QZ43
Ensembl - ENSG00000107566
  
Related genetic diseases (OMIM): 615681 - Spastic paraplegia 62, 615681
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 erlin1ENSDARG00000021991Danio rerio
 ERLIN1ENSGALG00000003308Gallus gallus
 Erlin1ENSMUSG00000025198Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ERLIN2 / O94905 / ER lipid raft associated 2ENSG0000014747571


Protein motifs (from Interpro)
Interpro ID Name
 IPR001107  Band 7 domain
 IPR033294  Erlin1/2
 IPR036013  Band 7/SPFH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0008202 steroid metabolic process IEA
 biological_processGO:0008203 cholesterol metabolic process IEA
 biological_processGO:0030433 ubiquitin-dependent ERAD pathway IEA
 biological_processGO:0032933 SREBP signaling pathway IMP
 biological_processGO:0045541 negative regulation of cholesterol biosynthetic process IMP
 biological_processGO:0045717 negative regulation of fatty acid biosynthetic process IMP
 biological_processGO:0055085 transmembrane transport TAS
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0032991 protein-containing complex IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0015485 cholesterol binding IDA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA


Pathways (from Reactome)
Pathway description
ABC-family proteins mediated transport
Defective CFTR causes cystic fibrosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001284 Areflexia 
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 HP:0001317 Abnormality of the cerebellum 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002061 Lower limb spasticity 
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 HP:0002064 Spastic gait 
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 HP:0002169 Clonus 
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 HP:0002355 Difficulty walking 
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 HP:0002943 Thoracic scoliosis 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003676 Progressive disorder 
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 HP:0006380 Knee flexion deformities 
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 HP:0006844 Absent patellar reflexes 
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 HP:0012514 Lower limb pain "Pain in the leg with no clear focal etiology." [ORCID:0000-0001-5208-3432]
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 HP:0030051 Tip-toe gait "An abnormal gait pattern characterized by the failue of the heel to contact the floor at the onset of stance during gait." [pmid:24757457]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000147475 ERLIN2 / O94905 / ER lipid raft associated 2  / complex






 

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