ENSG00000107815


Homo sapiens

Features
Gene ID: ENSG00000107815
  
Biological name :TWNK
  
Synonyms : Q96RR1 / twinkle mtDNA helicase / TWNK
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: q24.31
Gene start: 100987367
Gene end: 100994401
  
Corresponding Affymetrix probe sets: 218590_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000496246
Ensembl peptide - ENSP00000496012
Ensembl peptide - ENSP00000496746
Ensembl peptide - ENSP00000309595
Ensembl peptide - ENSP00000359248
Ensembl peptide - ENSP00000494326
Ensembl peptide - ENSP00000494389
NCBI entrez gene - 56652     See in Manteia.
OMIM - 606075
RefSeq - XM_017016437
RefSeq - NM_001163812
RefSeq - NM_001163813
RefSeq - NM_001163814
RefSeq - NM_021830
RefSeq - XM_011539975
RefSeq Peptide - NP_001157285
RefSeq Peptide - NP_001157286
RefSeq Peptide - NP_068602
RefSeq Peptide - NP_001157284
swissprot - Q96RR1
swissprot - E5KSY5
Ensembl - ENSG00000107815
  
Related genetic diseases (OMIM): 271245 - Mitochondrial DNA depletion syndrome 7 (hepatocerebral type), 271245
  609286 - Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 3, 609286
  616138 - Perrault syndrome 5, 616138
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 twnkENSDARG00000099900Danio rerio
 TWNKENSGALG00000017627Gallus gallus
 TwnkENSMUSG00000025209Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007694  DNA helicase, DnaB-like, C-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR034154  Archaeal primase DnaG/twinkle, TOPRIM domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006264 mitochondrial DNA replication NAS
 biological_processGO:0006268 DNA unwinding involved in DNA replication IEA
 biological_processGO:0006390 mitochondrial transcription IMP
 biological_processGO:0007005 mitochondrion organization TAS
 biological_processGO:0034214 protein hexamerization IDA
 biological_processGO:0051260 protein homooligomerization IDA
 biological_processGO:0071333 cellular response to glucose stimulus IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0042645 mitochondrial nucleoid IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0002020 protease binding IPI
 molecular_functionGO:0003678 DNA helicase activity IEA
 molecular_functionGO:0003697 single-stranded DNA binding IDA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0043139 5"-3" DNA helicase activity IDA


Pathways (from Reactome)
Pathway description
Transcriptional activation of mitochondrial biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000133 Gonadal dysgenesis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000365 Hearing loss 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000590 External ophthalmoplegia, progressive (PEO) 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000786 Primary amenorrhea 
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 HP:0000815 Hypergonadotropic hypogonadism "Reduced function of the gonads (testes in males or ovaries in females) associated with excess pituitary gonadotropin secretion and resulting in delayed sexual development and growth delay." [HPO:curators]
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 HP:0000817 Poor eye contact 
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 HP:0000819 Diabetes mellitus 
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 HP:0000820 Abnormality of the thyroid gland 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001262 Somnolence 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001284 Areflexia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001298 Encephalopathy 
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 HP:0001300 Parkinsonism 
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 HP:0001315 Reduced reflexes 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001618 Dysphonia 
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 HP:0001638 Cardiomyopathy 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001662 Bradycardia 
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 HP:0001730 Progressive hearing loss 
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 HP:0001751 Vestibular dysfunction 
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 HP:0001761 Pes cavus 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002076 Migraine 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002133 Status epilepticus 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002270 Abnormality of the autonomic nervous system "An abnormality of the autonomic nervous system, which is the part of the peripheral nervous system that controls visceral functions such as heart rate and digestion and functions largely below the level of consciousness." [HPO:curators]
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 HP:0002305 Athetosis "Athetosis (from the Greek word for changeable or unfixed ) refers to an inability to sustain the muscles of the fingers, toes, tongue, or any other group of muscles in a fixed position. Instead, posture is interrupted by slow, purposeless involuntary movements." [HPO:curators]
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 HP:0002312 Clumsiness 
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 HP:0002403 Positive Romberg sign 
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 HP:0002578 Gastroparesis 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003200 Ragged-red muscle fibers "An abnormal appearance of muscle fibers observed on muscle biopsy. Ragged red fibers can be visualized with Gomori trichrome (GT) staining as irregular and intensely red subsarcolemmal zones, whereas the normal myofibrils are green. The margins of affect fibers appear red and ragged." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003323 Muscle weakness, progressive 
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003390 Sensory axonal neuropathy "An axonal neuropathy of peripheral sensory nerves." [HPO:curators]
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 HP:0003434 Sensory ataxic neuropathy 
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003542 Increased serum pyruvate "An abnormal increase in the concentration of pyruvate in the blood. Pyruvate is involved in energy metabolism, forming part of glycolysis and the citric acid cycle." [HPO:curators]
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 HP:0003546 Exercise intolerance 
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 HP:0003548 Electron microscopy shows subsarcolemmal accumulations of abnormally shaped mitochondria 
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 HP:0003557 Increased variability in muscle fiber size "An abnormally high degree of muscle fiber size variation. This phenotypic feature can be observed upon muscle biopsy." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003676 Progressive disorder 
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 HP:0003688 Muscle biopsy shows decreased activity of cytochrome C oxidase 
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 HP:0003689 Muscle biopsy shows multiple mitochondrial DNA (mtDNA) deletions 
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 HP:0003690 Limb muscle weakness "Weakness of the muscles of the arms and legs." [HPO:curators]
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003713 Muscle fiber necrosis "Abnormal cell death involving muscle fibers usually associated with break in, or absence of, muscle surface fiber membrane and resulting in irreversible damage to muscle fibers." [HPO:curators]
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 HP:0003812 Phenotypic variability 
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 HP:0004389 Intestinal pseudo-obstruction 
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 HP:0006858 Distal sensory loss of proprioception and vibration sense 
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 HP:0006886 Decreased distal vibration sense "A decrease in the ability to perceive vibration in the distal portions of the limbs." [HPO:curators]
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 HP:0006957 Loss of ability to walk 
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 HP:0007240 Progressive gait ataxia 
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 HP:0007344 Atrophy/Degeneration involving the spinal cord 
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 HP:0007366 Atrophy/Degeneration affecting the brainstem 
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 HP:0008180 Mildly elevated creatine phosphokinase 
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 HP:0008209 Premature ovarian failure 
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 HP:0010871 Sensory ataxia "Incoordination of movement caused by a deficit in the sensory nervous system. Sensory ataxia can be distinguished from cerebellar ataxia by asking the patient to close his or her eyes. Persons with cerebellar ataxia show only a minimal worsening of symptoms, whereas persons with sensory ataxia show a marked worsening of symptoms." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012847 Epilepsia partialis continua "A form of partial status epilepticus with simple motor manifestations that are maintained for over one hour, with clonic activity restricted to one body part and recurring at fairly regular intervals." [UToronto:htrang]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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