ENSG00000109534


Homo sapiens

Features
Gene ID: ENSG00000109534
  
Biological name :GAR1
  
Synonyms : GAR1 / GAR1 ribonucleoprotein / Q9NY12
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q25
Gene start: 109815510
Gene end: 109824740
  
Corresponding Affymetrix probe sets: 219110_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000378127
Ensembl peptide - ENSP00000226796
NCBI entrez gene - 54433     See in Manteia.
OMIM - 606468
RefSeq - NM_018983
RefSeq - NM_032993
RefSeq Peptide - NP_061856
RefSeq Peptide - NP_127460
swissprot - Q9NY12
swissprot - A0A024RDJ3
Ensembl - ENSG00000109534
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gar1ENSDARG00000076526Danio rerio
 GAR1ENSGALG00000020164Gallus gallus
 Gar1ENSMUSG00000028010Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007504  H/ACA ribonucleoprotein complex, subunit Gar1/Naf1
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR021154  H/ACA ribonucleoprotein complex, subunit Gar1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000454 snoRNA guided rRNA pseudouridine synthesis IBA
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0007004 telomere maintenance via telomerase TAS
 biological_processGO:0031118 rRNA pseudouridine synthesis TAS
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IDA
 cellular_componentGO:0001650 fibrillar center IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005697 telomerase holoenzyme complex TAS
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0031429 box H/ACA snoRNP complex TAS
 cellular_componentGO:0072589 box H/ACA scaRNP complex TAS
 cellular_componentGO:0090661 box H/ACA telomerase RNP complex TAS
 molecular_functionGO:0003723 RNA binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0034513 box H/ACA snoRNA binding IPI
 molecular_functionGO:0070034 telomerase RNA binding IPI


Pathways (from Reactome)
Pathway description
rRNA modification in the nucleus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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