ENSMUSG00000028010


Mus musculus

Features
Gene ID: ENSMUSG00000028010
  
Biological name :Gar1
  
Synonyms : Gar1 / H/ACA ribonucleoprotein complex subunit 1 / Q9CY66
  
Possible biological names infered from orthology : GAR1 ribonucleoprotein / Q9NY12
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: G3
Gene start: 129824912
Gene end: 129831396
  
Corresponding Affymetrix probe sets: 10502146 (MoGene1.0st)   1418305_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000029643
Ensembl peptide - ENSMUSP00000115191
Ensembl peptide - ENSMUSP00000118752
NCBI entrez gene - 68147     See in Manteia.
MGI - MGI:1930948
RefSeq - XM_011240208
RefSeq - NM_026578
RefSeq Peptide - NP_080854
swissprot - D3YZ09
swissprot - Q9CY66
swissprot - F6SL78
Ensembl - ENSMUSG00000028010
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gar1ENSDARG00000076526Danio rerio
 GAR1ENSGALG00000020164Gallus gallus
 GAR1ENSG00000109534Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007504  H/ACA ribonucleoprotein complex, subunit Gar1/Naf1
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR021154  H/ACA ribonucleoprotein complex, subunit Gar1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000454 snoRNA guided rRNA pseudouridine synthesis IEA
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IEA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0001651 dense fibrillar component ISO
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0031429 box H/ACA snoRNP complex IEA
 cellular_componentGO:0090661 box H/ACA telomerase RNP complex IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030515 snoRNA binding ISO
 molecular_functionGO:0034513 box H/ACA snoRNA binding IEA
 molecular_functionGO:0070034 telomerase RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003019 increased circulating chloride level "elevated concentration of chlorine salts in the circulation" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, RGD:Rat Genome Database submission]
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Allelic Composition: Gap43tm1a(EUCOMM)Wtsi/Gap43+
Genetic Background: B6JTyr;B6N-Gap43tm1a(EUCOMM)Wtsi/Wtsi

 MP:0003020 decreased circulating chloride level "reduced concentration of chlorine salts in the circulation" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, RGD:Rat Genome Database submission]
Show

Allelic Composition: Gap43tm1a(EUCOMM)Wtsi/Gap43+
Genetic Background: B6JTyr;B6N-Gap43tm1a(EUCOMM)Wtsi/Wtsi

 MP:0005633 increased circulating sodium level "greater than the normal concentration in the blood of this metallic element, the most plentiful extracellular ion in the body and the principal determinant of extracellular fluid volume" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, RGD:Rat Genome Database submission]
Show

Allelic Composition: Gap43tm1a(EUCOMM)Wtsi/Gap43+
Genetic Background: B6JTyr;B6N-Gap43tm1a(EUCOMM)Wtsi/Wtsi

 MP:0005634 decreased circulating sodium level "less than the normal concentration in the blood of this metallic element, the most plentiful extracellular ion in the body and the principal determinant of extracellular fluid volume" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, RGD:Rat Genome Database submission]
Show

Allelic Composition: Gap43tm1a(EUCOMM)Wtsi/Gap43+
Genetic Background: B6JTyr;B6N-Gap43tm1a(EUCOMM)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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