ENSGALG00000020164


Gallus gallus

Features
Gene ID: ENSGALG00000020164
  
Biological name :GAR1
  
Synonyms : GAR1 / GAR1 ribonucleoprotein
  
Possible biological names infered from orthology : H/ACA ribonucleoprotein complex subunit 1 / Q9CY66 / Q9NY12
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 58489311
Gene end: 58492435
  
Corresponding Affymetrix probe sets: GgaAffx.21456.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000031498
NCBI entrez gene - 422697     See in Manteia.
RefSeq - XM_004935955
swissprot - E1C818
Ensembl - ENSGALG00000020164
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gar1ENSDARG00000076526Danio rerio
 GAR1ENSG00000109534Homo sapiens
 Gar1ENSMUSG00000028010Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007504  H/ACA ribonucleoprotein complex, subunit Gar1/Naf1
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR021154  H/ACA ribonucleoprotein complex, subunit Gar1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000454 snoRNA guided rRNA pseudouridine synthesis IBA
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IEA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0031429 box H/ACA snoRNP complex IEA
 cellular_componentGO:0090661 box H/ACA telomerase RNP complex IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0034513 box H/ACA snoRNA binding IEA
 molecular_functionGO:0070034 telomerase RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr