ENSG00000109618


Homo sapiens

Features
Gene ID: ENSG00000109618
  
Biological name :SEPSECS
  
Synonyms : Q9HD40 / Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase / SEPSECS
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: p15.2
Gene start: 25120014
Gene end: 25160442
  
Corresponding Affymetrix probe sets: 1553167_a_at (Human Genome U133 Plus 2.0 Array)   1569634_at (Human Genome U133 Plus 2.0 Array)   227982_at (Human Genome U133 Plus 2.0 Array)   231730_at (Human Genome U133 Plus 2.0 Array)   235516_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000351857
Ensembl peptide - ENSP00000421880
Ensembl peptide - ENSP00000423361
Ensembl peptide - ENSP00000423850
Ensembl peptide - ENSP00000371535
NCBI entrez gene - 51091     See in Manteia.
OMIM - 613009
RefSeq - XM_017008278
RefSeq - NM_016955
RefSeq - XM_011513846
RefSeq - XM_011513847
RefSeq - XM_011513848
RefSeq - XM_017008277
RefSeq Peptide - NP_058651
swissprot - H0Y9D2
swissprot - J3KP25
swissprot - D6R969
swissprot - Q9HD40
Ensembl - ENSG00000109618
  
Related genetic diseases (OMIM): 613811 - Pontocerebellar hypoplasia type 2D, 613811
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sepsecsENSDARG00000033861Danio rerio
 SEPSECSENSGALG00000014386Gallus gallus
 Q6P6M7ENSMUSG00000029173Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008829  SepSecS/SepCysS family
 IPR015421  Pyridoxal phosphate-dependent transferase, major domain
 IPR015424  Pyridoxal phosphate-dependent transferase
 IPR019793  Peroxidases heam-ligand binding site
 IPR019872  O-phosphoseryl-tRNA(Sec) selenium transferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001514 selenocysteine incorporation ISS
 biological_processGO:0006412 translation IEA
 biological_processGO:0016259 selenocysteine metabolic process TAS
 biological_processGO:0097056 selenocysteinyl-tRNA(Sec) biosynthetic process IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0000049 tRNA binding ISS
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016785 transferase activity, transferring selenium-containing groups IEA
 molecular_functionGO:0098621 phosphoseryl-selenocysteinyl-tRNA selenium transferase activity TAS


Pathways (from Reactome)
Pathway description
Selenocysteine synthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000737 Irritability 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0002059 Cerebral atrophy 
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 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002169 Clonus 
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002518 Periventricular white matter changes 
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 HP:0003121 Limb contractures 
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 HP:0003593 Early onset 
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 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000109618 Q9HD40 / SEPSECS / Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase  / complex






 

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