ENSG00000111670


Homo sapiens

Features
Gene ID: ENSG00000111670
  
Biological name :GNPTAB
  
Synonyms : GNPTAB / N-acetylglucosamine-1-phosphate transferase alpha and beta subunits / Q3T906
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q23.2
Gene start: 101745497
Gene end: 101830938
  
Corresponding Affymetrix probe sets: 212959_s_at (Human Genome U133 Plus 2.0 Array)   220398_at (Human Genome U133 Plus 2.0 Array)   240106_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000450413
Ensembl peptide - ENSP00000449557
Ensembl peptide - ENSP00000450161
Ensembl peptide - ENSP00000299314
Ensembl peptide - ENSP00000376651
Ensembl peptide - ENSP00000449150
Ensembl peptide - ENSP00000449217
NCBI entrez gene - 79158     See in Manteia.
OMIM - 607840
RefSeq - XM_017019962
RefSeq - NM_024312
RefSeq - XM_006719593
RefSeq - XM_011538731
RefSeq - XM_017019961
RefSeq Peptide - NP_077288
swissprot - Q3T906
swissprot - Q9BUA5
swissprot - H0YIE6
swissprot - H0YIK3
swissprot - H0YIU2
swissprot - F8VQW2
Ensembl - ENSG00000111670
  
Related genetic diseases (OMIM): 252500 - Mucolipidosis II alpha/beta, 252500
  252600 - Mucolipidosis III alpha/beta, 252600
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gnptabENSDARG00000030153Danio rerio
 GNPTABENSGALG00000012763Gallus gallus
 GnptabENSMUSG00000035311Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000800  Notch domain
 IPR002048  EF-hand domain
 IPR010506  DMAP1-binding domain
 IPR018247  EF-Hand 1, calcium-binding site
 IPR021520  Stealth protein CR2, conserved region 2
 IPR031356  Stealth protein CR4, conserved region 4
 IPR031357  Stealth protein CR3, conserved region 3
 IPR031358  Stealth protein CR1, conserved region 1
 IPR035993  Notch-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007040 lysosome organization IMP
 biological_processGO:0009306 protein secretion IEA
 biological_processGO:0016256 N-glycan processing to lysosome IMP
 biological_processGO:0033299 secretion of lysosomal enzymes IEA
 biological_processGO:0046835 carbohydrate phosphorylation IDA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003976 UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity IMP
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016772 transferase activity, transferring phosphorus-containing groups IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000023 Inguinal hernia 
Show

 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
Show

 HP:0000187 Broad alveolar ridges 
Show

 HP:0000280 Coarse facial features 
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
Show

 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
Show

 HP:0000343 Long philtrum 
Show

 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
Show

 HP:0000403 Recurrent otitis media 
Show

 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
Show

 HP:0000484 Hyperopic astigmatism 
Show

 HP:0000485 Megalocornea "An enlargement of the `cornea` (FMA:58238) with normal clarity and function. Megalocornea is diagnosed with a horizontal corneal diameter of 12 mm or more at birth or 13 mm or more after two years of age." [HPO:curators]
Show

 HP:0000535 Sparse eyebrows 
Show

 HP:0000546 Retinal degeneration 
Show

 HP:0000765 Abnormality of the thorax "Any abnormality of the thorax (the region of the body formed by the sternum, the thoracic vertebrae and the ribs)." [HPO:curators]
Show

 HP:0000773 Short ribs 
Show

 HP:0000882 Hypoplastic scapulae 
Show

 HP:0000885 Broad ribs 
Show

 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
Show

 HP:0000943 Dysostosis multiplex 
Show

 HP:0000963 Thin skin 
Show

 HP:0001048 Cavernous hemangioma "The presence of a cavernous hemangioma. A hemangioma characterized by large endothelial spaces (caverns) is called a cavernous hemangioma." [HPO:curators]
Show

 HP:0001072 Thickened skin 
Show

 HP:0001131 Corneal dystrophy 
Show

 HP:0001171 Ectrodactyly (hands) 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
Show

 HP:0001328 Learning disability 
Show

 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
Show

 HP:0001498 Carpal bone hypoplasia 
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
Show

 HP:0001538 Protuberant abdomen "A thrusting or bulging out of the abdomen." [HPO:curators]
Show

 HP:0001540 Diastasis recti 
Show

 HP:0001547 Abnormality of the morphology or size of the rib cage 
Show

 HP:0001609 Hoarse voice 
Show

 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
Show

 HP:0001639 Hypertrophic cardiomyopathy 
Show

 HP:0001640 Cardiomegaly 
Show

 HP:0001654 Abnormality of the heart valves "An abnormality of a `Cardiac valve` (FMA:7110)." [HPO:probinson]
Show

 HP:0001659 Aortic insufficiency "An insufficiency of the aortic valve, leading to regurgitation (backward flow) of blood from the aorta into the left ventricle." [HPO:curators]
Show

 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
Show

 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
Show

 HP:0001824 Weight loss 
Show

 HP:0002196 Myelopathy 
Show

 HP:0002205 Recurrent respiratory infections 
Show

 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002680 J-shaped sella turcica "A deformity of the sella turcica whereby the sella extends further anterior than normal such that the anterior clinoid process appears to overhang it, giving the appearance of the letter J on imaging of the skull." [HPO:curators]
Show

 HP:0002684 Thickened calvaria "The presence of an abnormally thick calvaria." [HPO:curators]
Show

 HP:0002690 Large sella turcica "An abnormal enlargement of the sella turcica." [HPO:curators]
Show

 HP:0002756 Pathologic fracture "A pathologic fracture occurs when a bone breaks in an area that is weakened secondary to another disease process such as tumor, infection, and certain inherited bone disorders. A pathologic fracture can occur without a degree of trauma required to cause fracture in healthy bone." [HPO:curators]
Show

 HP:0002808 Kyphosis 
Show

 HP:0002827 Dislocated hips 
Show

 HP:0002837 Bronchitis 
Show

 HP:0002869 Flared iliac wings 
Show

 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
Show

 HP:0003026 Short long bones 
Show

 HP:0003180 Flat acetabular roofs 
Show

 HP:0003182 Shallow acetabular fossae 
Show

 HP:0003264 Deficiency of N-acetylglucosamine-1-phosphotransferase 
Show

 HP:0003300 Ovoid vertebral bodies 
Show

 HP:0003311 Hypoplastic odontoid process 
Show

 HP:0003333 Increased serum beta-hexosaminidase (10-20x) 
Show

 HP:0003414 Atlantoaxial dislocation "Partial dislocation of the atlantoaxial joint." [HPO:curators]
Show

 HP:0003423 Thoracolumbar kyphoscoliosis 
Show

 HP:0003538 Increased serum iduronate sulfatase (10-20x) 
Show

 HP:0003819 Death in childhood 
Show

 HP:0004236 Irregular carpal bones 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004562 beaking of vertebral bodies t12-l3 
Show

 HP:0005280 Depressed nasal root and bridge 
Show

 HP:0006162 Soft tissue swelling of interphalangeal joints 
Show

 HP:0006362 Varus deformity of humeral neck 
Show

 HP:0006532 Pneumonia, recurrent episodes 
Show

 HP:0006610 Wide intermamillary distance 
Show

 HP:0007759 Corneal opacities, not impairing visual acuity 
Show

 HP:0008155 Acid mucopolysacchariduria 
Show

 HP:0008470 Narrowness of interpediculate distances in lower thoracic regions 
Show

 HP:0008850 Postnatal growth retardation, severe 
Show

 HP:0009092 Progressive alveolar ridge hypertropy 
Show

 HP:0009769 Bullet-shaped phalanges of the hand "The presence of short and wide phalanges which taper distally ("bullet shaped")." [HPO:curators]
Show

 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
Show

 HP:0012185 Constrictive median neuropathy "Injury to the median nerve caused by its entrapment at the wrist as it traverses through the carpal tunnel. Clinically, constrictive median neuropathy is characterized by pain, paresthesia, and weakness in the median nerve distribution of the hand." [HPO:probinson]
Show

 HP:0012639 Abnormality of nervous system morphology "A structural anomaly of the `nervous system` (FMA:7157)." [HPO:probinson]
Show

 HP:0030148 Heart murmur "An extra or unusual sound heard during a heartbeat caused vibrations resulting from the flow of blood through the heart." [HPO:probinson]
Show

 HP:0100540 Palpebral edema 
Show

 HP:0100679 Lack of skin elasticity 
Show

 HP:0100790 Hernia 
Show

 HP:0200020 Corneal erosions "Erosions or Abbrasions of the cornea s outermost layer of epithelial cells." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr