ENSG00000114573


Homo sapiens

Features
Gene ID: ENSG00000114573
  
Biological name :ATP6V1A
  
Synonyms : ATP6V1A / ATPase H+ transporting V1 subunit A / P38606
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q13.31
Gene start: 113747019
Gene end: 113812056
  
Corresponding Affymetrix probe sets: 201971_s_at (Human Genome U133 Plus 2.0 Array)   201972_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000273398
Ensembl peptide - ENSP00000420146
Ensembl peptide - ENSP00000419294
Ensembl peptide - ENSP00000417545
NCBI entrez gene - 523     See in Manteia.
OMIM - 607027
RefSeq - NM_001690
RefSeq Peptide - NP_001681
swissprot - P38606
swissprot - F8WDJ3
swissprot - C9JA17
swissprot - C9JVW8
Ensembl - ENSG00000114573
  
Related genetic diseases (OMIM): 617403 - Cutis laxa, autosomal recessive, type IID, 617403
  618012 - Epileptic encephalopathy, infantile or early childhood, 3, 618012
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atp6v1aaENSDARG00000034534Danio rerio
 atp6v1abENSDARG00000076318Danio rerio
 ATP6V1AENSGALG00000014800Gallus gallus
 P50516ENSMUSG00000052459Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000194  ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain
 IPR004100  ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain
 IPR005725  ATPase, V1 complex, subunit A
 IPR020003  ATPase, alpha/beta subunit, nucleotide-binding domain, active site
 IPR022878  V-type ATP synthase catalytic alpha chain
 IPR024034  ATPase, F1/V1 complex, beta/alpha subunit, C-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031686  ATPsynthase alpha/beta subunit, N-terminal extension
 IPR036121  ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006879 cellular iron ion homeostasis IMP
 biological_processGO:0008286 insulin receptor signaling pathway TAS
 biological_processGO:0015991 ATP hydrolysis coupled proton transport IEA
 biological_processGO:0016241 regulation of macroautophagy NAS
 biological_processGO:0033572 transferrin transport TAS
 biological_processGO:0034220 ion transmembrane transport TAS
 biological_processGO:0036295 cellular response to increased oxygen levels IMP
 biological_processGO:0046034 ATP metabolic process IEA
 biological_processGO:0090383 phagosome acidification TAS
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005765 lysosomal membrane HDA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0005902 microvillus IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0016469 proton-transporting two-sector ATPase complex TAS
 cellular_componentGO:0033180 proton-transporting V-type ATPase, V1 domain IEA
 cellular_componentGO:0043209 myelin sheath IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046961 proton-transporting ATPase activity, rotational mechanism IBA


Pathways (from Reactome)
Pathway description
ROS, RNS production in phagocytes
Insulin receptor recycling
Transferrin endocytosis and recycling
Ion channel transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000023 Inguinal hernia 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000319 Flat philtrum 
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 HP:0000343 Long philtrum 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000455 Broad nasal tip 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000670 Carious teeth 
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 HP:0000726 Dementia 
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 HP:0000750 Impaired language development 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001374 Congenital hip dislocation 
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 HP:0001476 Delayed closure of the anterior fontanelle "A delay in closure (ossification) of the anterior fontanelle, which generally undergoes closure around the 18th month of life." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002208 Coarse hair 
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 HP:0002361 Psychomotor degeneration 
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 HP:0002465 Poor speech 
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 HP:0002761 Generalized joint laxity "Joint hypermobility (ability of a joint to move beyond its normal range of motion) affecting many or all joints of the body." [HPO:curators]
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 HP:0003160 Abnormal isoelectric focusing of serum transferrin 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003199 Decreased muscle mass 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005272 Prominent nasolabial folds 
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 HP:0005989 Redundant neck skin 
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 HP:0006891 Thick cerebral cortex 
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 HP:0007392 Excessive wrinkled skin 
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 HP:0007457 Prominent thoracic and abdominal veins 
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 HP:0007552 Abnormal subcutaneous fat tissue distribution 
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 HP:0008070 Sparse hair 
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 HP:0008897 Growth retardation, progressive 
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 HP:0008947 Infantile muscular hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in infancy." [HPO:curators]
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 HP:0009125 Lipodystrophy "Degenerative changes of the fat tissue." [HPO:curators]
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 HP:0010989 Abnormality of the intrinsic pathway "An abnormality of the `intrinsic pathway` (GO:0007597) (also known as the contact activation pathway) of the coagulation cascade." [HPO:probinson]
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 HP:0011003 Severe Myopia 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0025167 Fragmented elastic fibers in the dermis "Elastic fibers in the dermis exhibit an increased number of breaks associated with disorganization of the structure of the elastic fibers." []
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 HP:0025201 Abnormal apolipoprotein level "A deviation from the normal concentration in blood of an apolipoprotin, i.e., of a protein that binds lipids to form lipoprotein and is thereby responsible for the transport of lipids in the blood and lymph circulation." []
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 HP:0025244 Subretinal pigment epithelium hemorrhage "An accumulation of blood located between the retinal pigment epithelium (RPE) and Bruch s membrane." []
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 HP:0100874 Thick hair "Increased density of `hairs` (FMA:53667), i.e., and elevanted number of hairs per unit area." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000114573 P38606 / ATP6V1A / ATPase H+ transporting V1 subunit A  / complex






 

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