ENSG00000115266


Homo sapiens

Features
Gene ID: ENSG00000115266
  
Biological name :APC2
  
Synonyms : APC2 / APC2, WNT signaling pathway regulator / O95996
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: p13.3
Gene start: 1446302
Gene end: 1473244
  
Corresponding Affymetrix probe sets: 205320_at (Human Genome U133 Plus 2.0 Array)   217174_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000466803
Ensembl peptide - ENSP00000466173
Ensembl peptide - ENSP00000467073
Ensembl peptide - ENSP00000468199
Ensembl peptide - ENSP00000233607
Ensembl peptide - ENSP00000238483
Ensembl peptide - ENSP00000442954
NCBI entrez gene - 10297     See in Manteia.
OMIM - 612034
RefSeq - XM_006722610
RefSeq - NM_001351273
RefSeq - NM_005883
RefSeq - XM_005259475
RefSeq - XM_006722607
RefSeq - XM_006722608
RefSeq - XM_006722609
RefSeq Peptide - NP_001338202
RefSeq Peptide - NP_005874
swissprot - B5MDS5
swissprot - K7ELQ3
swissprot - K7EN62
swissprot - K7ERC5
swissprot - O95996
swissprot - A0A0C4DGQ0
Ensembl - ENSG00000115266
  
Related genetic diseases (OMIM): 617169 - ?Sotos syndrome 3, 617169
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 apc2ENSDARG00000063007Danio rerio
 APC2ENSGALG00000042153Gallus gallus
 Apc2ENSMUSG00000020135Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
APC / P25054 / APC, WNT signaling pathway regulatorENSG0000013498238
AC008575.1ENSG000002588642


Protein motifs (from Interpro)
Interpro ID Name
 IPR000225  Armadillo
 IPR009223  Adenomatous polyposis coli protein repeat
 IPR009224  SAMP
 IPR009234  Adenomatous polyposis coli protein basic domain
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR026818  Adenomatous polyposis coli (APC) family
 IPR026831  Adenomatous polyposis coli protein
 IPR026837  Adenomatous polyposis coli 2
 IPR032038  Adenomatous polyposis coli, N-terminal dimerisation domain
 IPR036149  APC, N-terminal coiled-coil domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000226 microtubule cytoskeleton organization IMP
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0030178 negative regulation of Wnt signaling pathway IEA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IDA
 biological_processGO:0090630 activation of GTPase activity IMP
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0005881 cytoplasmic microtubule IDA
 cellular_componentGO:0005884 actin filament IDA
 cellular_componentGO:0015630 microtubule cytoskeleton IDA
 cellular_componentGO:0016342 catenin complex IDA
 cellular_componentGO:0030496 midbody IDA
 cellular_componentGO:0031258 lamellipodium membrane IDA
 cellular_componentGO:0031941 filamentous actin IDA
 cellular_componentGO:0045171 intercellular bridge IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008013 beta-catenin binding IDA
 molecular_functionGO:0008017 microtubule binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000075 Renal duplication 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000098 Increased body height 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000268 Dolichocephaly 
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 HP:0000276 Long face 
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 HP:0000280 Coarse facial features 
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000448 Prominent nose 
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 HP:0000457 Flat nose 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0000752 Hyperactivity 
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 HP:0000826 Precocious puberty "The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys." [HPO:curators]
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001374 Congenital hip dislocation 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001671 Abnormality of the cardiac septa 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002465 Poor speech 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002857 Genu valgum 
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 HP:0002970 Genu varum 
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 HP:0004375 Neoplasia of the nervous system 
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 HP:0004482 Relative macrocephaly "A relatively mild degree of macrocephaly in which the head circumference is not above two standard deviations from the mean, but appears dysproportionately large when other factors such as body stature are taken into account." [HPO:curators]
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 HP:0005562 Multiple renal cysts 
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 HP:0005616 Accelerated skeletal maturation "An abnormally increased rate of skeletal maturation. Accelerated skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0006288 Premature eruption of teeth 
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 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0008872 Feeding problems in infancy 
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 HP:0010978 Abnormality of immune system physiology "A functional abnormality of the `immune system` (FMA:9825)." [HPO:probinson, MP:0001790]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0030736 Sacrococcygeal teratoma "A teratoma arising in the sacro-coccygeal region." [] {comment="UToronto:chum"}
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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