ENSG00000134982


Homo sapiens

Features
Gene ID: ENSG00000134982
  
Biological name :APC
  
Synonyms : APC / APC, WNT signaling pathway regulator / P25054
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q22.2
Gene start: 112707498
Gene end: 112846239
  
Corresponding Affymetrix probe sets: 203525_s_at (Human Genome U133 Plus 2.0 Array)   203526_s_at (Human Genome U133 Plus 2.0 Array)   203527_s_at (Human Genome U133 Plus 2.0 Array)   215310_at (Human Genome U133 Plus 2.0 Array)   216933_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000424265
Ensembl peptide - ENSP00000423828
Ensembl peptide - ENSP00000426541
Ensembl peptide - ENSP00000484935
Ensembl peptide - ENSP00000481752
Ensembl peptide - ENSP00000473355
Ensembl peptide - ENSP00000427089
Ensembl peptide - ENSP00000257430
Ensembl peptide - ENSP00000423224
NCBI entrez gene - 324     See in Manteia.
OMIM - 611731
RefSeq - NM_001127510
RefSeq - NM_000038
RefSeq - NM_001127511
RefSeq - NM_001354895
RefSeq - NM_001354897
RefSeq - NM_001354898
RefSeq - NM_001354899
RefSeq - NM_001354901
RefSeq Peptide - NP_001341826
RefSeq Peptide - NP_001341828
RefSeq Peptide - NP_001341830
RefSeq Peptide - NP_000029
RefSeq Peptide - NP_001120982
RefSeq Peptide - NP_001120983
RefSeq Peptide - NP_001341824
RefSeq Peptide - NP_001341827
swissprot - E9PFT7
swissprot - E7EMH9
swissprot - P25054
swissprot - R4GMU6
swissprot - D6RFL6
swissprot - A0A087X2F3
swissprot - A0A087WYF3
Ensembl - ENSG00000134982
  
Related genetic diseases (OMIM): 611731 - Adenoma, periampullary, somatic
  175100 - Adenomatous polyposis coli, 175100
  114500 - Colorectal cancer, somatic, 114500
  135290 - Desmoid disease, hereditary, 135290
  613659 - Gastric cancer, somatic, 613659
  114550 - Hepatoblastoma, somatic, 114550
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 apcENSDARG00000058868Danio rerio
 APCENSGALG00000000220Gallus gallus
 ApcENSMUSG00000005871Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
APC2 / O95996 / APC2, WNT signaling pathway regulatorENSG0000011526630
AC008575.1ENSG000002588643


Protein motifs (from Interpro)
Interpro ID Name
 IPR000225  Armadillo
 IPR009223  Adenomatous polyposis coli protein repeat
 IPR009224  SAMP
 IPR009232  EB-1 binding
 IPR009234  Adenomatous polyposis coli protein basic domain
 IPR009240  Adenomatous polyposis coli protein, 15 residue repeat
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR026818  Adenomatous polyposis coli (APC) family
 IPR026831  Adenomatous polyposis coli protein
 IPR026836  Adenomatous polyposis coli
 IPR032038  Adenomatous polyposis coli, N-terminal dimerisation domain
 IPR036149  APC, N-terminal coiled-coil domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000281 mitotic cytokinesis IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007026 negative regulation of microtubule depolymerization IEA
 biological_processGO:0007050 cell cycle arrest IEA
 biological_processGO:0007094 mitotic spindle assembly checkpoint IMP
 biological_processGO:0007155 cell adhesion NAS
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0008286 insulin receptor signaling pathway IMP
 biological_processGO:0010942 positive regulation of cell death IMP
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0016477 cell migration IEA
 biological_processGO:0016579 protein deubiquitination TAS
 biological_processGO:0030178 negative regulation of Wnt signaling pathway IEA
 biological_processGO:0030335 positive regulation of cell migration IMP
 biological_processGO:0031274 positive regulation of pseudopodium assembly IMP
 biological_processGO:0032886 regulation of microtubule-based process IMP
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process TAS
 biological_processGO:0045732 positive regulation of protein catabolic process IGI
 biological_processGO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IDA
 biological_processGO:0051260 protein homooligomerization IMP
 biological_processGO:0051988 regulation of attachment of spindle microtubules to kinetochore IMP
 biological_processGO:0060070 canonical Wnt signaling pathway NAS
 biological_processGO:0065003 protein-containing complex assembly IDA
 biological_processGO:0070830 bicellular tight junction assembly NAS
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway NAS
 biological_processGO:0097194 execution phase of apoptosis TAS
 biological_processGO:1904781 positive regulation of protein localization to centrosome IMP
 biological_processGO:1904885 beta-catenin destruction complex assembly TAS
 biological_processGO:1904886 beta-catenin destruction complex disassembly TAS
 cellular_componentGO:0000776 kinetochore IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005912 adherens junction IEA
 cellular_componentGO:0005913 cell-cell adherens junction IDA
 cellular_componentGO:0005923 bicellular tight junction IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016328 lateral plasma membrane IDA
 cellular_componentGO:0016342 catenin complex IDA
 cellular_componentGO:0030027 lamellipodium IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030877 beta-catenin destruction complex IDA
 cellular_componentGO:0032587 ruffle membrane IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 cellular_componentGO:1990909 Wnt signalosome NAS
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008013 beta-catenin binding IEA
 molecular_functionGO:0008017 microtubule binding IDA
 molecular_functionGO:0019887 protein kinase regulator activity IDA
 molecular_functionGO:0019901 protein kinase binding IPI
 molecular_functionGO:0031625 ubiquitin protein ligase binding IDA
 molecular_functionGO:0042802 identical protein binding IMP
 molecular_functionGO:0045295 gamma-catenin binding IPI
 molecular_functionGO:0051010 microtubule plus-end binding IDA
 molecular_functionGO:0070840 dynein complex binding IPI


Pathways (from Reactome)
Pathway description
Apoptotic cleavage of cellular proteins
Degradation of beta-catenin by the destruction complex
Beta-catenin phosphorylation cascade
Deactivation of the beta-catenin transactivating complex
Disassembly of the destruction complex and recruitment of AXIN to the membrane
Misspliced GSK3beta mutants stabilize beta-catenin
S33 mutants of beta-catenin arent phosphorylated
S37 mutants of beta-catenin arent phosphorylated
S45 mutants of beta-catenin arent phosphorylated
T41 mutants of beta-catenin arent phosphorylated
APC truncation mutants are not K63 polyubiquitinated
APC truncation mutants have impaired AXIN binding
AXIN missense mutants destabilize the destruction complex
Truncations of AMER1 destabilize the destruction complex
Ovarian tumor domain proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000126 Hydronephrosis 
Show

 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000322 Short philtrum 
Show

 HP:0000365 Hearing loss 
Show

 HP:0000411 Protruding ears 
Show

 HP:0000444 Beaked nose 
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000520 Proptosis 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
Show

 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
Show

 HP:0000670 Carious teeth 
Show

 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
Show

 HP:0000706 Unerupted teeth 
Show

 HP:0000772 Abnormality of the ribs 
Show

 HP:0000821 Hypothyroidism 
Show

 HP:0000953 Hyperpigmentation 
Show

 HP:0001012 Lipomas "The presence of multiple lipomas (a type of benign tissue made of fatty tissue)." [HPO:curators]
Show

 HP:0001163 Abnormality of the metacarpal bones 
Show

 HP:0001376 Decreased mobility of joints 
Show

 HP:0001402 Hepatocellular carcinoma 
Show

 HP:0001413 Micronodular cirrhosis 
Show

 HP:0001425 Heterogeneous 
Show

 HP:0001428 Somatic mutation 
Show

 HP:0001482 Subcutaneous nodules 
Show

 HP:0001601 Laryngomalacia 
Show

 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0001802 Absent toenails 
Show

 HP:0001817 Absent fingernails 
Show

 HP:0001849 Oligodactyly (feet) "A developmental defect resulting in the presence of fewer than the normal number of toes." [HPO:curators]
Show

 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
Show

 HP:0002024 Malabsorption 
Show

 HP:0002027 Abdominal pain 
Show

 HP:0002239 Gastrointestinal hemorrhage 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
Show

 HP:0002797 Osteolysis 
Show

 HP:0002827 Dislocated hips 
Show

 HP:0002829 Arthralgia 
Show

 HP:0002884 Hepatoblastoma 
Show

 HP:0002885 Medulloblastoma 
Show

 HP:0002891 Uterine leiomyosarcoma 
Show

 HP:0002895 Papillary thyroid carcinoma 
Show

 HP:0002974 Radioulnar synostosis "An abnormal osseous union (fusion) between the radius and the ulna." [HPO:curators]
Show

 HP:0002983 Micromelia 
Show

 HP:0002984 Hypoplasia of the radius "Underdevelopment of the radius." [HPO:curators]
Show

 HP:0003003 Colon cancer 
Show

 HP:0003011 Abnormality of musculature "Abnormality originating in one or more muscles." [HPO:curators]
Show

 HP:0003022 Hypoplasia of the ulna "Underdevelopment of the ulna." [HPO:curators]
Show

 HP:0003042 Elbow dislocation "A dislocation affecting the elbow joint, where the radius, ulna, and humerus meet." [HPO:curators]
Show

 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
Show

 HP:0003312 Abnormal form of the vertebral bodies 
Show

 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
Show

 HP:0003828 Variable expressivity 
Show

 HP:0004298 Abnormality of the abdominal wall "The presence of any abnormality affecting the abdominal wall." [HPO:curators]
Show

 HP:0004394 Multiple gastric polyps 
Show

 HP:0004736 Ectopic kidney with fusion 
Show

 HP:0004783 multiple duodenal polyps 
Show

 HP:0005048 fusion of carpal bones, especially capitate and hamate 
Show

 HP:0005214 Intestinal obstruction 
Show

 HP:0005227 Multiple adenomatous colon polyps 
Show

 HP:0005584 Renal cell carcinoma "Renal cell carcinoma (also known as hypernephroma) is the most common form of kidney cancer arising from the proximal renal tubule. The tissue of origin for renal cell carcinoma is the proximal renal tubular epithelium. Renal cell carcinoma can be classified as 1) clear cell carcinoma, 2) papillary carcinoma, 3) chromophobe renal carcinoma, and 4) collecting duct carcinoma." [HPO:curators]
Show

 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0006572 Subacute progressive viral hepatitis 
Show

 HP:0006716 Hereditary nonpolyposis colorectal carcinoma 
Show

 HP:0006722 Small intestine carcinoid 
Show

 HP:0006740 Transitional cell carcinoma of the bladder 
Show

 HP:0006744 Adrenocortical carcinoma 
Show

 HP:0006753 Increased gastric cancer 
Show

 HP:0006771 Duodenal carcinoma 
Show

 HP:0007477 Abnormal dermatoglyphics "An abnormality of dermatoglyphs (fingerprints), which are present on fingers, palms, toes, and soles." [HPO:curators]
Show

 HP:0007649 Congenital hypertrophy of retinal pigment epithelium 
Show

 HP:0007703 Abnormal retinal pigmentation 
Show

 HP:0008069 Neoplasia of the skin 
Show

 HP:0008256 Adrenocortical adenoma "Adrenocortical adenomas are benign tumors of the adrenal cortex." [HPO:curators]
Show

 HP:0008678 Renal hypoplasia/aplasia 
Show

 HP:0009592 Astrocytoma "Astrocytoma is a neoplasm of the central nervous system derived from astrocytes." [HPO:curators]
Show

 HP:0009778 Hypoplastic/small thumb 
Show

 HP:0010562 Keloids "Presence of one or more keloids. A keloid is a sharply elevated, irregularly shaped, progressively enlarging scar resulting from formation of excessive amounts of collagen in the dermis during connective tissue repair." [MeSH:D007627]
Show

 HP:0010619 Fibroma of the breast "A connective tissue tumor of the breast which is usually benign and painless. Fibromas of the breast are more common in young woman." [HPO:curators]
Show

 HP:0011068 Odontoma "The presence of an `odontoma` (MPATH:387)." [HPO:ibailleulforestier]
Show

 HP:0011069 Increased number of teeth "The presence of a `supernumerary` (PATO:0000470), i.e., extra, `tooth` (FMA:12516) or teeth." [HPO:ibailleulforestier]
Show

 HP:0012126 Stomach cancer "A cancer arising in any part of the stomach." [HPO:probinson]
Show

 HP:0100245 Desmoid tumors "Benign, slow-growing tumors without any metastatic potential. Despite their benign nature, they can damage nearby structures causing organ dysfunction. Histologically they resemble low-grade fibrosarcomas, but they are very locally aggressive and tend to recur even after complete resection. There is a tendency for recurrence in the setting of prior surgery and the most common localisation of these tumors is intraabdominal from smooth muscle cells of the instestine." [HPO:sdoelken]
Show

 HP:0100246 Osteoma "Osteomas are bony growths found most commonly on the skull and mandible; however, they may occur in any bone of the body. Osteomas do not usually cause clinical problems and do not become malignant." [HPO:sdoelken]
Show

 HP:0100749 Chest pain 
Show

 HP:0100806 Sepsis 
Show

 HP:0200008 Multiple intestinal polyps 
Show

 HP:0200040 Skin cysts "The presence of one or more `cysts` (MPATH:62) of the `skin` (FMA:7163)." [HPO:skoehler]
Show

 HP:0410067 Increased level of L-fucose in urine "An increase in the level of L-fucose in the urine." [PMID:2311216]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000019995 Q9UGI0 / ZRANB1 / zinc finger RANBP2-type containing 1  / complex / reaction
 ENSG00000166167 BTRC / Q9Y297 / beta-transducin repeat containing E3 ubiquitin protein ligase  / complex
 ENSG00000164305 CASP3 / P42574 / caspase 3  / reaction
 ENSG00000159692 CTBP1 / Q13363 / C-terminal binding protein 1  / complex
 ENSG00000168036 CTNNB1 / P35222 / catenin beta 1  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr