ENSG00000116001


Homo sapiens

Features
Gene ID: ENSG00000116001
  
Biological name :TIA1
  
Synonyms : P31483 / TIA1 / TIA1 cytotoxic granule associated RNA binding protein
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p13.3
Gene start: 70209444
Gene end: 70248660
  
Corresponding Affymetrix probe sets: 1554889_at (Human Genome U133 Plus 2.0 Array)   1554890_a_at (Human Genome U133 Plus 2.0 Array)   201446_s_at (Human Genome U133 Plus 2.0 Array)   201447_at (Human Genome U133 Plus 2.0 Array)   201448_at (Human Genome U133 Plus 2.0 Array)   201449_at (Human Genome U133 Plus 2.0 Array)   201450_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000404023
Ensembl peptide - ENSP00000402263
Ensembl peptide - ENSP00000413751
Ensembl peptide - ENSP00000430969
Ensembl peptide - ENSP00000427794
Ensembl peptide - ENSP00000282574
Ensembl peptide - ENSP00000354838
Ensembl peptide - ENSP00000399567
Ensembl peptide - ENSP00000401371
NCBI entrez gene - 7072     See in Manteia.
OMIM - 603518
RefSeq - XM_017004800
RefSeq - XM_005264528
RefSeq - XM_005264531
RefSeq - XM_011533077
RefSeq - XM_011533078
RefSeq - XM_011533081
RefSeq - XM_011533082
RefSeq - XM_017004789
RefSeq - XM_017004790
RefSeq - XM_017004791
RefSeq - XM_017004792
RefSeq - XM_017004793
RefSeq - XM_017004794
RefSeq - XM_017004795
RefSeq - XM_017004796
RefSeq - XM_017004797
RefSeq - XM_017004798
RefSeq - XM_017004799
RefSeq - NM_001351508
RefSeq - NM_001351509
RefSeq - NM_001351510
RefSeq - NM_001351511
RefSeq - NM_001351512
RefSeq - NM_001351513
RefSeq - NM_001351514
RefSeq - NM_001351524
RefSeq - NM_022037
RefSeq - NM_022173
RefSeq - XM_005264527
RefSeq Peptide - NP_001338438
RefSeq Peptide - NP_001338441
RefSeq Peptide - NP_001338442
RefSeq Peptide - NP_001338443
RefSeq Peptide - NP_001338453
RefSeq Peptide - NP_071320
RefSeq Peptide - NP_071505
RefSeq Peptide - NP_001338437
RefSeq Peptide - NP_001338439
RefSeq Peptide - NP_001338440
swissprot - E5RG67
swissprot - F8W8I6
swissprot - F8WE16
swissprot - H7BY49
swissprot - C9JTN7
swissprot - E5RGV5
swissprot - P31483
Ensembl - ENSG00000116001
  
Related genetic diseases (OMIM): 604454 - Welander distal myopathy, 604454
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TIA1ENSGALG00000013879Gallus gallus
 Tia1ENSMUSG00000071337Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TIAL1 / Q01085 / TIA1 cytotoxic granule associated RNA binding protein like 1ENSG0000015192376
RBM42 / Q9BTD8 / RNA binding motif protein 42ENSG0000012625418


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034827  TIA-1, RNA recognition motif 1
 IPR034830  TIA-1, RNA recognition motif 2
 IPR034832  TIA-1, RNA recognition motif 3
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006915 apoptotic process TAS
 biological_processGO:0008543 fibroblast growth factor receptor signaling pathway TAS
 biological_processGO:0017148 negative regulation of translation IEA
 biological_processGO:0042036 negative regulation of cytokine biosynthetic process IEA
 biological_processGO:0048024 regulation of mRNA splicing, via spliceosome IDA
 biological_processGO:1903608 protein localization to cytoplasmic stress granule IMP
 biological_processGO:1904037 positive regulation of epithelial cell apoptotic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0010494 cytoplasmic stress granule IDA
 cellular_componentGO:0097165 nuclear stress granule IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008143 poly(A) binding TAS
 molecular_functionGO:0017091 AU-rich element binding IEA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0003198 Myopathy 
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 HP:0003376 Steppage gait "An abnormal gait pattern that arises from weakness of the pretibial and peroneal muscles due to a lower motor neuron lesion. Affected patients have footdrop and are unable to dorsiflex and evert the foot. The leg is lifted high on walking so that the toes clear the ground, and there may be a slapping noise when the foot strikes the ground again." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003677 Slow progression 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003805 Rimmed vacuoles 
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 HP:0008180 Mildly elevated creatine phosphokinase 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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