ENSG00000126254


Homo sapiens

Features
Gene ID: ENSG00000126254
  
Biological name :RBM42
  
Synonyms : Q9BTD8 / RBM42 / RNA binding motif protein 42
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.12
Gene start: 35629030
Gene end: 35637686
  
Corresponding Affymetrix probe sets: 205740_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000468060
Ensembl peptide - ENSP00000467278
Ensembl peptide - ENSP00000467614
Ensembl peptide - ENSP00000262633
Ensembl peptide - ENSP00000466044
Ensembl peptide - ENSP00000466548
NCBI entrez gene - 79171     See in Manteia.
OMIM - 613232
RefSeq - XM_005259257
RefSeq - NM_001319113
RefSeq - NM_024321
RefSeq Peptide - NP_001306042
RefSeq Peptide - NP_077297
swissprot - K7EML2
swissprot - K7ER08
swissprot - K7EQ03
swissprot - K7EP90
swissprot - Q9BTD8
Ensembl - ENSG00000126254
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm42ENSDARG00000039910Danio rerio
 Rbm42ENSMUSG00000036733Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TIAL1 / Q01085 / TIA1 cytotoxic granule associated RNA binding protein like 1ENSG0000015192315
TIA1 / P31483 / TIA1 cytotoxic granule associated RNA binding proteinENSG0000011600114


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034215  RBM42, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr