ENSMUSG00000036733


Mus musculus

Features
Gene ID: ENSMUSG00000036733
  
Biological name :Rbm42
  
Synonyms : Q91V81 / Rbm42 / RNA-binding protein 42
  
Possible biological names infered from orthology : Q9BTD8 / RNA binding motif protein 42
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: B1
Gene start: 30640999
Gene end: 30650317
  
Corresponding Affymetrix probe sets: 10562073 (MoGene1.0st)   10338885 (MoGene1.0st)   10339245 (MoGene1.0st)   10340084 (MoGene1.0st)   10340346 (MoGene1.0st)   10340935 (MoGene1.0st)   10341022 (MoGene1.0st)   10341126 (MoGene1.0st)   10341261 (MoGene1.0st)   10341555 (MoGene1.0st)   10341969 (MoGene1.0st)   10342466 (MoGene1.0st)   10342886 (MoGene1.0st)   10344053 (MoGene1.0st)   10344125 (MoGene1.0st)   10344317 (MoGene1.0st)   10338616 (MoGene1.0st)   10338623 (MoGene1.0st)   10339095 (MoGene1.0st)   10339717 (MoGene1.0st)   10339744 (MoGene1.0st)   10339898 (MoGene1.0st)   10343502 (MoGene1.0st)   10343962 (MoGene1.0st)   10344196 (MoGene1.0st)   1415739_at (Mouse Genome 430 2.0 Array)   1454183_at (Mouse Genome 430 2.0 Array)   1460641_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000103776
Ensembl peptide - ENSMUSP00000040005
NCBI entrez gene - 68035     See in Manteia.
MGI - MGI:1915285
RefSeq - NM_133693
RefSeq Peptide - NP_598454
swissprot - D3YYW8
swissprot - Q91V81
Ensembl - ENSMUSG00000036733
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm42ENSDARG00000039910Danio rerio
 RBM42ENSG00000126254Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tial1 / P70318 / Tia1 cytotoxic granule-associated RNA binding protein-like 1 / Q01085*ENSMUSG0000003084615
Tia1 / P52912 / cytotoxic granule-associated RNA binding protein 1 / P31483* / TIA1 cytotoxic granule associated RNA binding protein*ENSMUSG0000007133715


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034215  RBM42, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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