ENSDARG00000039910


Danio rerio

Features
Gene ID: ENSDARG00000039910
  
Biological name :rbm42
  
Synonyms : rbm42 / RNA binding motif protein 42
  
Possible biological names infered from orthology : Q91V81 / Q9BTD8 / RNA-binding protein 42
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 44881829
Gene end: 44900306
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000058379
NCBI entrez gene - 445360     See in Manteia.
RefSeq - NM_001003850
RefSeq Peptide - NP_001003850
swissprot - A0A0R4I9C3
ZFIN ID - ZDB-GENE-040809-2
Ensembl - ENSDARG00000039910
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM42ENSG00000126254Homo sapiens
 Rbm42ENSMUSG00000036733Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tia1 / TIA1 cytotoxic granule-associated RNA binding proteinENSDARG0000005253613
tial1 / TIA1 cytotoxic granule-associated RNA binding protein-like 1 / P70318* / Q01085*ENSDARG0000000952513
tia1l / cytotoxic granule-associated RNA binding protein 1, likeENSDARG0000002647612


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034215  RBM42, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000035 lens lens quality , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
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 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
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 ZFA:0001114 head head decreased width , abnormal
head pointed , abnormal
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 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr