ENSDARG00000009525


Danio rerio

Features
Gene ID: ENSDARG00000009525
  
Biological name :tial1
  
Synonyms : TIA1 cytotoxic granule-associated RNA binding protein-like 1 / tial1
  
Possible biological names infered from orthology : P70318 / Q01085
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 25472005
Gene end: 25484752
  
Corresponding Affymetrix probe sets: Dr.26508.1.A1_at (Zebrafish Array)   NM_201132_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000020234
Ensembl peptide - ENSDARP00000122887
Ensembl peptide - ENSDARP00000119428
NCBI entrez gene - 394107     See in Manteia.
RefSeq - NM_201132
RefSeq Peptide - NP_957426
swissprot - E9QJJ0
swissprot - E9QEY1
swissprot - Q7SXQ1
ZFIN ID - ZDB-GENE-040426-1547
Ensembl - ENSDARG00000009525
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TIA1ENSGALG00000009427Gallus gallus
 TIAL1ENSG00000151923Homo sapiens
 Tial1ENSMUSG00000030846Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tia1 / TIA1 cytotoxic granule-associated RNA binding proteinENSDARG0000005253674
tia1l / cytotoxic granule-associated RNA binding protein 1, likeENSDARG0000002647669
rbm42 / RNA binding motif protein 42 / Q91V81* / Q9BTD8* / RNA-binding protein 42 *ENSDARG0000003991014


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034492  TIAR, RNA recognition motif 1
 IPR034494  TIAR, RNA recognition motif 2
 IPR034496  TIAR, RNA recognition motif 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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