ENSDARG00000052536


Danio rerio

Features
Gene ID: ENSDARG00000052536
  
Biological name :tia1
  
Synonyms : tia1 / TIA1 cytotoxic granule-associated RNA binding protein
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 56950861
Gene end: 56964547
  
Corresponding Affymetrix probe sets: Dr.25287.1.A1_at (Zebrafish Array)   Dr.4576.1.S1_at (Zebrafish Array)   Dr.8541.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000068889
NCBI entrez gene - 793165     See in Manteia.
RefSeq - XM_009301868
RefSeq - XM_009301867
RefSeq Peptide - NP_997793
swissprot - Q7ZVY0
ZFIN ID - ZDB-GENE-030131-1506
Ensembl - ENSDARG00000052536
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tial1 / TIA1 cytotoxic granule-associated RNA binding protein-like 1 / P70318* / Q01085*ENSDARG0000000952571
tia1l / cytotoxic granule-associated RNA binding protein 1, likeENSDARG0000002647668
rbm42 / RNA binding motif protein 42 / Q91V81* / Q9BTD8* / RNA-binding protein 42 *ENSDARG0000003991014


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034827  TIA-1, RNA recognition motif 1
 IPR034830  TIA-1, RNA recognition motif 2
 IPR034832  TIA-1, RNA recognition motif 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr