ENSDARG00000026476


Danio rerio

Features
Gene ID: ENSDARG00000026476
  
Biological name :tia1l
  
Synonyms : cytotoxic granule-associated RNA binding protein 1, like / tia1l
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 24510619
Gene end: 24517768
  
Corresponding Affymetrix probe sets: Dr.5585.1.S1_at (Zebrafish Array)   NM_200182_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000018009
NCBI entrez gene - 323447     See in Manteia.
RefSeq - XM_005165110
RefSeq - NM_200182
RefSeq Peptide - NP_956476
swissprot - Q7ZVM6
ZFIN ID - ZDB-GENE-030131-2167
Ensembl - ENSDARG00000026476
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tia1 / TIA1 cytotoxic granule-associated RNA binding proteinENSDARG0000005253677
tial1 / TIA1 cytotoxic granule-associated RNA binding protein-like 1 / P70318* / Q01085*ENSDARG0000000952575
rbm42 / RNA binding motif protein 42 / Q91V81* / Q9BTD8* / RNA-binding protein 42 *ENSDARG0000003991014


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034496  TIAR, RNA recognition motif 3
 IPR034830  TIA-1, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism dead , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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