ENSG00000116704


Homo sapiens

Features
Gene ID: ENSG00000116704
  
Biological name :SLC35D1
  
Synonyms : Q9NTN3 / SLC35D1 / solute carrier family 35 member D1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p31.3
Gene start: 66999332
Gene end: 67054099
  
Corresponding Affymetrix probe sets: 209711_at (Human Genome U133 Plus 2.0 Array)   209712_at (Human Genome U133 Plus 2.0 Array)   209713_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000235345
NCBI entrez gene - 23169     See in Manteia.
OMIM - 610804
RefSeq - XM_011541070
RefSeq - NM_015139
RefSeq - XM_006710478
RefSeq Peptide - NP_055954
swissprot - Q9NTN3
Ensembl - ENSG00000116704
  
Related genetic diseases (OMIM): 269250 - Schneckenbecken dysplasia, 269250
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc35d1aENSDARG00000011973Danio rerio
 SLC35D1ENSGALG00000011121Gallus gallus
 A2AKQ0ENSMUSG00000028521Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q76EJ3 / SLC35D2 / solute carrier family 35 member D2ENSG0000013095850
AL160269.1ENSG0000028526932
Q5M8T2 / SLC35D3 / solute carrier family 35 member D3ENSG0000018274723


Protein motifs (from Interpro)
Interpro ID Name
 IPR004853  Sugar phosphate transporter domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006065 UDP-glucuronate biosynthetic process TAS
 biological_processGO:0008643 carbohydrate transport IEA
 biological_processGO:0015787 UDP-glucuronic acid transmembrane transport IEA
 biological_processGO:0030206 chondroitin sulfate biosynthetic process IEA
 biological_processGO:0048706 embryonic skeletal system development IEA
 biological_processGO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005461 UDP-glucuronic acid transmembrane transporter activity TAS
 molecular_functionGO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEA


Pathways (from Reactome)
Pathway description
Formation of the active cofactor, UDP-glucuronate
Defective SLC35D1 causes Schneckenbecken dysplasia (SCHBCKD)
Transport of nucleotide sugars


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000268 Dolichocephaly 
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000773 Short ribs 
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 HP:0000774 Narrow chest 
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 HP:0000882 Hypoplastic scapulae 
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 HP:0000895 Hooked clavicles 
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 HP:0000907 Anterior rib cupping 
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 HP:0000946 Hypoplastic ilia 
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 HP:0000947 Dumbbell-shaped long bones 
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 HP:0001004 Lymphedema 
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 HP:0001156 Brachydactyly 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001561 Polyhydramnios 
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0002983 Micromelia 
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 HP:0003025 Irregular metaphyses 
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 HP:0003038 Fibular hypoplasia "Underdevelopment of the fibula." [HPO:curators]
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 HP:0003180 Flat acetabular roofs 
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 HP:0003300 Ovoid vertebral bodies 
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 HP:0003826 Stillborn or neonatal death 
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 HP:0004233 Advanced maturation/advanced ossification of carpal bones 
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 HP:0005019 Diaphyseal thickening 
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 HP:0005616 Accelerated skeletal maturation "An abnormally increased rate of skeletal maturation. Accelerated skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0008108 Advanced tarsal ossification 
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 HP:0008479 Hypoplastic vertebral bodies 
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 HP:0008873 Short stature, disproportionate short-limbed "A type of short stature characterized by a short limbs but an average-sized trunk." [HPO:curators]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0012107 Increased fibular diameter "Increased width of the cross sectional diameter of the fibula." [HPO:probinson, MP:0008159]
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 HP:0031026 Snail-like ilia "The ilia is round and hypoplastic with a very flat acetabular roof and a very unusual medial projection of bone that is said to resemble the head of a snail. Figure 4 of PMID:3799723 illustrates this feature." [PMID:3799723]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000116704 Q9NTN3 / SLC35D1 / solute carrier family 35 member D1  / complex






 

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