ENSG00000116906


Homo sapiens

Features
Gene ID: ENSG00000116906
  
Biological name :GNPAT
  
Synonyms : glyceronephosphate O-acyltransferase / GNPAT / O15228
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: q42.2
Gene start: 231241207
Gene end: 231277973
  
Corresponding Affymetrix probe sets: 201956_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000355607
Ensembl peptide - ENSP00000402811
Ensembl peptide - ENSP00000411640
Ensembl peptide - ENSP00000496537
NCBI entrez gene - 8443     See in Manteia.
OMIM - 602744
RefSeq - XM_011544304
RefSeq - NM_001316350
RefSeq - NM_014236
RefSeq - XM_005273313
RefSeq - XM_011544303
RefSeq Peptide - NP_001303279
RefSeq Peptide - NP_055051
swissprot - Q5TBH6
swissprot - Q5TBH8
swissprot - O15228
Ensembl - ENSG00000116906
  
Related genetic diseases (OMIM): 222765 - Rhizomelic chondrodysplasia punctata, type 2, 222765
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gnpatENSDARG00000074401Danio rerio
 si:ch73-21k16.5ENSDARG00000078770Danio rerio
 GNPATENSGALG00000011163Gallus gallus
 GnpatENSMUSG00000031985Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GPAM / Q9HCL2 / glycerol-3-phosphate acyltransferase, mitochondrialENSG0000011992722
GPAT2 / Q6NUI2 / glycerol-3-phosphate acyltransferase 2, mitochondrialENSG0000018628117


Protein motifs (from Interpro)
Interpro ID Name
 IPR002123  Phospholipid/glycerol acyltransferase
 IPR022284  Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase
 IPR028353  Dihydroxyacetone phosphate acyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006650 glycerophospholipid metabolic process IEA
 biological_processGO:0006654 phosphatidic acid biosynthetic process TAS
 biological_processGO:0007416 synapse assembly IEA
 biological_processGO:0007584 response to nutrient IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0008611 ether lipid biosynthetic process TAS
 biological_processGO:0021587 cerebellum morphogenesis IEA
 biological_processGO:0030913 paranodal junction assembly IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0042552 myelination IEA
 biological_processGO:0042594 response to starvation IEA
 biological_processGO:0044255 cellular lipid metabolic process IEA
 biological_processGO:0061024 membrane organization IEA
 biological_processGO:0070542 response to fatty acid IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005777 peroxisome NAS
 cellular_componentGO:0005778 peroxisomal membrane TAS
 cellular_componentGO:0005782 peroxisomal matrix TAS
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0005102 signaling receptor binding IPI
 molecular_functionGO:0008374 O-acyltransferase activity IEA
 molecular_functionGO:0016287 glycerone-phosphate O-acyltransferase activity TAS
 molecular_functionGO:0016290 palmitoyl-CoA hydrolase activity IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016746 transferase activity, transferring acyl groups IEA


Pathways (from Reactome)
Pathway description
Synthesis of PA
Plasmalogen biosynthesis
Peroxisomal protein import


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001508 Failure to thrive 
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 HP:0002644 Abnormality of the pelvis "An abnormality of the bony pelvis (pelvic girdle); which is a ring of bones connecting the vertebral column to the femurs." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002832 Calcific stippling "An abnormal punctate (speckled, dot-like) pattern of calcifications in soft tissues within or surrounding bones (as observed on radiographs)." [HPO:curators]
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 HP:0003301 Irregular vertebral endplates "An irregular surface of the vertebral end plates, which are normally relatively smooth." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005792 Humeral hypoplasia 
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 HP:0008838 Stippled calcification proximal humeral epiphyses 
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 HP:0008905 Rhizomelic short stature 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000018510 AGPS / O00116 / alkylglycerone phosphate synthase  / complex






 

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