ENSG00000117479


Homo sapiens

Features
Gene ID: ENSG00000117479
  
Biological name :SLC19A2
  
Synonyms : O60779 / SLC19A2 / solute carrier family 19 member 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q24.2
Gene start: 169463909
Gene end: 169486003
  
Corresponding Affymetrix probe sets: 209681_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000236137
Ensembl peptide - ENSP00000495500
Ensembl peptide - ENSP00000494404
Ensembl peptide - ENSP00000356778
NCBI entrez gene - 10560     See in Manteia.
OMIM - 603941
RefSeq - NM_001319667
RefSeq - NM_006996
RefSeq Peptide - NP_001306596
RefSeq Peptide - NP_008927
swissprot - O60779
swissprot - A0A024R8Y5
swissprot - A0A024R928
Ensembl - ENSG00000117479
  
Related genetic diseases (OMIM): 249270 - Thiamine-responsive megaloblastic anemia syndrome, 249270
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc19a2ENSDARG00000059712Danio rerio
 SLC19A2ENSGALG00000015218Gallus gallus
 Q9EQN9ENSMUSG00000040918Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9BZV2 / SLC19A3 / solute carrier family 19 member 3ENSG0000013591748
P41440 / SLC19A1 / solute carrier family 19 member 1ENSG0000017363836


Protein motifs (from Interpro)
Interpro ID Name
 IPR002666  Reduced folate carrier
 IPR028338  Thiamine transporter 1
 IPR036259  MFS transporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015884 folic acid transport IEA
 biological_processGO:0015888 thiamine transport NAS
 biological_processGO:0035461 vitamin transmembrane transport IEA
 biological_processGO:0042723 thiamine-containing compound metabolic process TAS
 biological_processGO:0051180 vitamin transport IEA
 biological_processGO:0071934 thiamine transmembrane transport ISS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008517 folic acid transmembrane transporter activity NAS
 molecular_functionGO:0015234 thiamine transmembrane transporter activity TAS
 molecular_functionGO:0090482 vitamin transmembrane transporter activity IEA


Pathways (from Reactome)
Pathway description
Vitamin B1 (thiamin) metabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000546 Retinal degeneration 
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 HP:0000548 Cone-rod dystrophy 
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 HP:0000556 Retinal dystrophy 
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 HP:0000572 Visual loss 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000819 Diabetes mellitus 
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 HP:0000951 Abnormality of the skin "An abnormality of the `skin` (FMA:7163)." [HPO:probinson]
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 HP:0000980 Pallor 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001297 Stroke 
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 HP:0001609 Hoarse voice 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001638 Cardiomyopathy 
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 HP:0001695 Cardiac arrest 
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 HP:0001696 Situs inversus "A left-right reversal (or "mirror reflection") of the anatomical location of the major thoracic and abdominal organs." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001889 Megaloblastic anemia 
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 HP:0001924 Sideroblastic anemia 
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 HP:0002014 Diarrhea 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002039 Anorexia 
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 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
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 HP:0003355 Abnormal urinary amino-acid findings 
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 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004860 megaloblastic anemia responsive only to thiamine 
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 HP:0006671 Paroxysmal atrial tachycardia 
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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