ENSG00000119705


Homo sapiens

Features
Gene ID: ENSG00000119705
  
Biological name :SLIRP
  
Synonyms : Q9GZT3 / SLIRP / SRA stem-loop interacting RNA binding protein
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q24.3
Gene start: 77708071
Gene end: 77761104
  
Corresponding Affymetrix probe sets: 221434_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000450849
Ensembl peptide - ENSP00000451606
Ensembl peptide - ENSP00000452057
Ensembl peptide - ENSP00000452162
Ensembl peptide - ENSP00000452329
Ensembl peptide - ENSP00000478794
Ensembl peptide - ENSP00000238688
Ensembl peptide - ENSP00000450587
Ensembl peptide - ENSP00000450770
Ensembl peptide - ENSP00000450909
NCBI entrez gene - 81892     See in Manteia.
OMIM - 610211
RefSeq - NM_031210
RefSeq - NM_001267863
RefSeq - NM_001267864
RefSeq Peptide - NP_112487
RefSeq Peptide - NP_001254793
RefSeq Peptide - NP_001254792
swissprot - Q9GZT3
swissprot - A0A087WUN7
swissprot - G3V2S9
swissprot - G3V4X6
swissprot - H0YJ07
swissprot - H0YJ40
swissprot - H0YJI1
swissprot - H0YJU7
swissprot - H0YJW7
Ensembl - ENSG00000119705
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slirpENSDARG00000097753Danio rerio
 SLIRPENSGALG00000031238Gallus gallus
 SlirpENSMUSG00000021040Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034152  SLIRP, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000961 negative regulation of mitochondrial RNA catabolic process IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007286 spermatid development IEA
 biological_processGO:0007338 single fertilization IEA
 biological_processGO:0030317 flagellated sperm motility IEA
 biological_processGO:0070584 mitochondrion morphogenesis IEA
 cellular_componentGO:0001669 acrosomal vesicle IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0036126 sperm flagellum IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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