ENSG00000120669


Homo sapiens

Features
Gene ID: ENSG00000120669
  
Biological name :SOHLH2
  
Synonyms : Q9NX45 / SOHLH2 / spermatogenesis and oogenesis specific basic helix-loop-helix 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: -1
Band: q13.3
Gene start: 36168208
Gene end: 36214615
  
Corresponding Affymetrix probe sets: 1555401_at (Human Genome U133 Plus 2.0 Array)   220129_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000326838
Ensembl peptide - ENSP00000369210
NCBI entrez gene - 54937     See in Manteia.
OMIM - 616066
RefSeq - NM_001282147
RefSeq - NM_017826
RefSeq Peptide - NP_001269076
RefSeq Peptide - NP_060296
swissprot - Q9NX45
Ensembl - ENSG00000120669
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9D489ENSMUSG00000027794Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CCDC169-SOHLH2 / CCDC169-SOHLH2 readthroughENSG0000025070997


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR032669  Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2
 IPR036638  Helix-loop-helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IBA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007283 spermatogenesis ISS
 biological_processGO:0009994 oocyte differentiation ISS
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048477 oogenesis IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0001046 core promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0042803 protein homodimerization activity ISS
 molecular_functionGO:0046982 protein heterodimerization activity ISS
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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