ENSG00000120925


Homo sapiens

Features
Gene ID: ENSG00000120925
  
Biological name :RNF170
  
Synonyms : Q96K19 / ring finger protein 170 / RNF170
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: p11.21
Gene start: 42849637
Gene end: 42897290
  
Corresponding Affymetrix probe sets: 1554312_at (Human Genome U133 Plus 2.0 Array)   220985_s_at (Human Genome U133 Plus 2.0 Array)   226104_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000436416
Ensembl peptide - ENSP00000435782
Ensembl peptide - ENSP00000437146
Ensembl peptide - ENSP00000445725
Ensembl peptide - ENSP00000240159
Ensembl peptide - ENSP00000325969
Ensembl peptide - ENSP00000326138
Ensembl peptide - ENSP00000434797
NCBI entrez gene - 81790     See in Manteia.
OMIM - 614649
RefSeq - XM_017013882
RefSeq - NM_001160224
RefSeq - NM_001160225
RefSeq - NM_030954
RefSeq - XM_006716404
RefSeq - XM_006716405
RefSeq - XM_011544666
RefSeq - XM_017013881
RefSeq - NM_001160223
RefSeq Peptide - NP_112216
RefSeq Peptide - NP_001153695
RefSeq Peptide - NP_001153696
RefSeq Peptide - NP_001153697
swissprot - Q96K19
swissprot - E9PP55
swissprot - E9PNG8
Ensembl - ENSG00000120925
  
Related genetic diseases (OMIM): 608984 - Ataxia, sensory, 1, autosomal dominant, 608984
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf170ENSDARG00000104069Danio rerio
 RNF170ENSGALG00000015386Gallus gallus
 Gm45692ENSMUSG00000109850Mus musculus
 Q8CBG9ENSMUSG00000013878Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR010652  Domain of unknown function DUF1232
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR018957  Zinc finger, C3HC4 RING-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001284 Areflexia 
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 HP:0002403 Positive Romberg sign 
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 HP:0003409 Distal sensory impairment of all modalities 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0006962 Gait instability, worse in the dark 
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 HP:0010871 Sensory ataxia "Incoordination of movement caused by a deficit in the sensory nervous system. Sensory ataxia can be distinguished from cerebellar ataxia by asking the patient to close his or her eyes. Persons with cerebellar ataxia show only a minimal worsening of symptoms, whereas persons with sensory ataxia show a marked worsening of symptoms." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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