ENSG00000123064


Homo sapiens

Features
Gene ID: ENSG00000123064
  
Biological name :DDX54
  
Synonyms : DDX54 / DEAD-box helicase 54 / Q8TDD1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q24.13
Gene start: 113157174
Gene end: 113185479
  
Corresponding Affymetrix probe sets: 219111_s_at (Human Genome U133 Plus 2.0 Array)   224433_s_at (Human Genome U133 Plus 2.0 Array)   225428_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000448477
Ensembl peptide - ENSP00000323858
Ensembl peptide - ENSP00000304072
Ensembl peptide - ENSP00000447098
Ensembl peptide - ENSP00000448189
NCBI entrez gene - 79039     See in Manteia.
OMIM - 611665
RefSeq - NM_001111322
RefSeq - NM_024072
RefSeq Peptide - NP_001104792
RefSeq Peptide - NP_076977
swissprot - Q8TDD1
swissprot - F8VRX4
swissprot - H0YHH7
swissprot - H0YHZ9
Ensembl - ENSG00000123064
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx54ENSDARG00000105286Danio rerio
 DDX54ENSGALG00000007490Gallus gallus
 Ddx54ENSMUSG00000029599Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR012541  DBP10, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR033517  DDX54/DBP10 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006396 RNA processing IDA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 biological_processGO:0016070 RNA metabolic process IDA
 biological_processGO:0030520 intracellular estrogen receptor signaling pathway TAS
 biological_processGO:1903507 negative regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0016020 membrane HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003714 transcription corepressor activity IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005102 signaling receptor binding IDA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0030331 estrogen receptor binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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