ENSGALG00000007490


Gallus gallus

Features
Gene ID: ENSGALG00000007490
  
Biological name :DDX54
  
Synonyms : DDX54 / DEAD-box helicase 54
  
Possible biological names infered from orthology : ATP-dependent RNA helicase DDX54 / Q8K4L0 / Q8TDD1
  
Species: Gallus gallus
  
Chr. number: 15
Strand: -1
Band:
Gene start: 9949491
Gene end: 9954653
  
Corresponding Affymetrix probe sets: GgaAffx.22259.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000012094
NCBI entrez gene - 416992     See in Manteia.
RefSeq - XM_003642225
swissprot - F1NTK9
Ensembl - ENSGALG00000007490
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx54ENSDARG00000105286Danio rerio
 DDX54ENSG00000123064Homo sapiens
 Ddx54ENSMUSG00000029599Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR012541  DBP10, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR033517  DDX54/DBP10 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 biological_processGO:0016070 RNA metabolic process IEA
 biological_processGO:1903507 negative regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005794 Golgi apparatus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0030331 estrogen receptor binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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