ENSG00000124496


Homo sapiens

Features
Gene ID: ENSG00000124496
  
Biological name :TRERF1
  
Synonyms : Q96PN7 / transcriptional regulating factor 1 / TRERF1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: p21.1
Gene start: 42224931
Gene end: 42452051
  
Corresponding Affymetrix probe sets: 229016_s_at (Human Genome U133 Plus 2.0 Array)   233324_at (Human Genome U133 Plus 2.0 Array)   238520_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000346285
Ensembl peptide - ENSP00000339438
Ensembl peptide - ENSP00000362013
Ensembl peptide - ENSP00000439689
Ensembl peptide - ENSP00000362008
NCBI entrez gene - 55809     See in Manteia.
OMIM - 610322
RefSeq - XM_017011055
RefSeq - NM_001297573
RefSeq - NM_033502
RefSeq - XM_017011051
RefSeq - XM_017011052
RefSeq - XM_017011053
RefSeq - XM_017011054
RefSeq - XM_011514741
RefSeq - XM_011514742
RefSeq - XM_011514743
RefSeq - XM_011514744
RefSeq - XM_011514745
RefSeq - XM_017011034
RefSeq - XM_017011035
RefSeq - XM_017011036
RefSeq - XM_017011037
RefSeq - XM_017011038
RefSeq - XM_017011039
RefSeq - XM_017011040
RefSeq - XM_017011041
RefSeq - XM_017011042
RefSeq - XM_017011043
RefSeq - XM_017011044
RefSeq - XM_017011045
RefSeq - XM_017011046
RefSeq - XM_017011047
RefSeq - XM_017011048
RefSeq - XM_017011049
RefSeq - XM_017011050
RefSeq Peptide - NP_277037
RefSeq Peptide - NP_001284502
swissprot - Q05GC8
swissprot - Q96PN7
Ensembl - ENSG00000124496
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BX000363.1ENSDARG00000088631Danio rerio
 TRERF1ENSGALG00000009896Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9H0D2 / ZNF541 / zinc finger protein 541ENSG0000011815622
Q6PJG2 / ELMSAN1 / ELM2 and Myb/SANT domain containing 1ENSG0000015603021


Protein motifs (from Interpro)
Interpro ID Name
 IPR000949  ELM2 domain
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR013087  Zinc finger C2H2-type
 IPR017884  SANT domain
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006694 steroid biosynthetic process NAS
 biological_processGO:0006707 cholesterol catabolic process NAS
 biological_processGO:0007275 multicellular organism development NAS
 biological_processGO:0042592 homeostatic process NAS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0046885 regulation of hormone biosynthetic process NAS
 cellular_componentGO:0000118 histone deacetylase complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005667 transcription factor complex IBA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0008301 DNA binding, bending NAS
 molecular_functionGO:0030374 nuclear receptor transcription coactivator activity NAS
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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