ENSG00000124562


Homo sapiens

Features
Gene ID: ENSG00000124562
  
Biological name :SNRPC
  
Synonyms : P09234 / small nuclear ribonucleoprotein polypeptide C / SNRPC
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p21.31
Gene start: 34757406
Gene end: 34773794
  
Corresponding Affymetrix probe sets: 201342_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000363129
Ensembl peptide - ENSP00000363130
Ensembl peptide - ENSP00000244520
NCBI entrez gene - 6631     See in Manteia.
OMIM - 603522
RefSeq - NM_003093
RefSeq Peptide - NP_003084
swissprot - A0A0A0MRR7
swissprot - P09234
swissprot - Q5TAL2
swissprot - Q5TAL4
Ensembl - ENSG00000124562
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpcENSDARG00000009871Danio rerio
 SNRPCENSGALG00000002773Gallus gallus
 SnrpcENSMUSG00000024217Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR013085  U1-C, C2H2-type zinc finger
 IPR017340  U1 small nuclear ribonucleoprotein C
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0000395 mRNA 5"-splice site recognition IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0000243 commitment complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005685 U1 snRNP IEA
 cellular_componentGO:0015030 Cajal body IDA
 cellular_componentGO:0071004 U2-type prespliceosome IEA
 cellular_componentGO:0071010 prespliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IDA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0030619 U1 snRNA binding IEA
 molecular_functionGO:0030627 pre-mRNA 5"-splice site binding IBA
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:1990446 U1 snRNP binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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