ENSMUSG00000024217


Mus musculus

Features
Gene ID: ENSMUSG00000024217
  
Biological name :Snrpc
  
Synonyms : Q62241 / Snrpc / U1 small nuclear ribonucleoprotein C
  
Possible biological names infered from orthology : P09234 / small nuclear ribonucleoprotein polypeptide C
  
Species: Mus musculus
  
Chr. number: 17
Strand: 1
Band: A3.3
Gene start: 27839974
Gene end: 27851968
  
Corresponding Affymetrix probe sets: 10426477 (MoGene1.0st)   10429081 (MoGene1.0st)   10443215 (MoGene1.0st)   1416197_at (Mouse Genome 430 2.0 Array)   1444655_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000063976
NCBI entrez gene - 20630     See in Manteia.
MGI - MGI:109489
RefSeq - NM_011432
RefSeq Peptide - NP_035562
swissprot - Q569X3
swissprot - Q62241
Ensembl - ENSMUSG00000024217
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpcENSDARG00000009871Danio rerio
 SNRPCENSGALG00000002773Gallus gallus
 SNRPCENSG00000124562Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR013085  U1-C, C2H2-type zinc finger
 IPR017340  U1 small nuclear ribonucleoprotein C
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0000395 mRNA 5"-splice site recognition IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0000243 commitment complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005685 U1 snRNP ISS
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0071004 U2-type prespliceosome IEA
 cellular_componentGO:0071010 prespliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0030619 U1 snRNA binding IEA
 molecular_functionGO:0030627 pre-mRNA 5"-splice site binding IBA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:1990446 U1 snRNP binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr