ENSGALG00000002773


Gallus gallus

Features
Gene ID: ENSGALG00000002773
  
Biological name :SNRPC
  
Synonyms : SNRPC / U1 small nuclear ribonucleoprotein C
  
Possible biological names infered from orthology : P09234 / Q62241 / small nuclear ribonucleoprotein polypeptide C
  
Species: Gallus gallus
  
Chr. number: 26
Strand: -1
Band:
Gene start: 4305763
Gene end: 4310425
  
Corresponding Affymetrix probe sets: Gga.18175.1.S1_at (Chicken Array)   GgaAffx.25617.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000004369
Ensembl peptide - ENSGALP00000062664
Ensembl peptide - ENSGALP00000062347
Ensembl peptide - ENSGALP00000048621
NCBI entrez gene - 419901     See in Manteia.
RefSeq - NM_001293166
RefSeq - XM_004935044
RefSeq Peptide - NP_001280095
swissprot - A0A1L1RV10
swissprot - A0A1D5P7D2
swissprot - A0A1L1RU46
swissprot - A0A1I7Q3Y9
Ensembl - ENSGALG00000002773
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpcENSDARG00000009871Danio rerio
 SNRPCENSG00000124562Homo sapiens
 SnrpcENSMUSG00000024217Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR013085  U1-C, C2H2-type zinc finger
 IPR017340  U1 small nuclear ribonucleoprotein C


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0000395 mRNA 5"-splice site recognition IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0000243 commitment complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005685 U1 snRNP IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0071004 U2-type prespliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0030619 U1 snRNA binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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