ENSG00000125755


Homo sapiens

Features
Gene ID: ENSG00000125755
  
Biological name :SYMPK
  
Synonyms : Q92797 / SYMPK / symplekin
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: q13.32
Gene start: 45815410
Gene end: 45863290
  
Corresponding Affymetrix probe sets: 1554595_at (Human Genome U133 Plus 2.0 Array)   1559587_at (Human Genome U133 Plus 2.0 Array)   202339_at (Human Genome U133 Plus 2.0 Array)   32402_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000471770
Ensembl peptide - ENSP00000473136
Ensembl peptide - ENSP00000479480
Ensembl peptide - ENSP00000478599
Ensembl peptide - ENSP00000245934
Ensembl peptide - ENSP00000469296
Ensembl peptide - ENSP00000470957
Ensembl peptide - ENSP00000470977
Ensembl peptide - ENSP00000471694
NCBI entrez gene - 8189     See in Manteia.
OMIM - 602388
RefSeq - NM_004819
RefSeq - XM_005259286
RefSeq - XM_011527354
RefSeq Peptide - NP_004810
swissprot - M0R039
swissprot - M0R180
swissprot - A0A087WUE9
swissprot - M0R3C7
swissprot - Q92797
swissprot - M0R1C2
swissprot - A0A024R0R6
swissprot - M0QXP5
swissprot - M0R033
Ensembl - ENSG00000125755
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sympkENSDARG00000059553Danio rerio
 SympkENSMUSG00000023118Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR021850  Symplekin/Pta1
 IPR022075  Symplekin C-terminal
 IPR026003  HEAT repeat associated with sister chromatid cohesion protein
 IPR032460  Symplekin/Pta1, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006378 mRNA polyadenylation IMP
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006406 mRNA export from nucleus TAS
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0031124 mRNA 3"-end processing TAS
 biological_processGO:0035307 positive regulation of protein dephosphorylation IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005923 bicellular tight junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0097165 nuclear stress granule IDA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA Derived from an Intronless Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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