ENSMUSG00000023118


Mus musculus

Features
Gene ID: ENSMUSG00000023118
  
Biological name :Sympk
  
Synonyms : Sympk / symplekin
  
Possible biological names infered from orthology : Q92797
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: A3
Gene start: 19024377
Gene end: 19054618
  
Corresponding Affymetrix probe sets: 10550531 (MoGene1.0st)   1428673_at (Mouse Genome 430 2.0 Array)   1459000_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000023882
Ensembl peptide - ENSMUSP00000115900
Ensembl peptide - ENSMUSP00000121540
Ensembl peptide - ENSMUSP00000138740
NCBI entrez gene - 68188     See in Manteia.
MGI - MGI:1915438
RefSeq - XM_006540333
RefSeq - NM_026605
RefSeq - XM_006540332
RefSeq Peptide - NP_080881
swissprot - D3Z2M2
swissprot - S4R2Q3
swissprot - F8WJD4
swissprot - F6UJ99
Ensembl - ENSMUSG00000023118
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sympkENSDARG00000059553Danio rerio
 SYMPKENSG00000125755Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR021850  Symplekin/Pta1
 IPR022075  Symplekin C-terminal
 IPR032460  Symplekin/Pta1, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IEA
 biological_processGO:0035307 positive regulation of protein dephosphorylation IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0097165 nuclear stress granule IEA
 molecular_functionGO:0005488 binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001577 anemia "less than normal levels of red blood cells, hemoglobin or volume of packed red blood cells " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:53370]
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Allelic Composition: Hsp90aa1Tg(Tyr)2396BOve/Hsp90aa1Tg(Tyr)2396BOve
Genetic Background: FVB/N-Hsp90aa1Tg(Tyr)2396BOve

 MP:0002192 hydrops fetalis "an abnormal accumulation of serous fluid in fetal tissues" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Hsp90aa1Tg(Tyr)2396BOve/Hsp90aa1Tg(Tyr)2396BOve
Genetic Background: FVB/N-Hsp90aa1Tg(Tyr)2396BOve

 MP:0004924 abnormal behavior "anomalies in the actions, reactions, or performance of an organism in response to external or internal stimuli compared to controls" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Kmt5btm1a(KOMP)Wtsi/Kmt5btm1a(KOMP)Wtsi
Genetic Background: B6JTyr;B6N-Kmt5btm1a(KOMP)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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