ENSG00000129824


Homo sapiens

Features
Gene ID: ENSG00000129824
  
Biological name :RPS4Y1
  
Synonyms : P22090 / ribosomal protein S4, Y-linked 1 / RPS4Y1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: Y
Strand: 1
Band: p11.2
Gene start: 2841486
Gene end: 2932000
  
Corresponding Affymetrix probe sets: 201909_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000250784
Ensembl peptide - ENSP00000415317
NCBI entrez gene - 6192     See in Manteia.
OMIM - 470000
RefSeq - NM_001008
RefSeq - XM_017030061
RefSeq Peptide - NP_000999
swissprot - C9JEH7
swissprot - P22090
Ensembl - ENSG00000129824
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps4xENSDARG00000014690Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8TD47 / RPS4Y2 / ribosomal protein S4, Y-linked 2ENSG0000028096994
RPS4X / P62701 / ribosomal protein S4, X-linkedENSG0000019803493


Protein motifs (from Interpro)
Interpro ID Name
 IPR000876  Ribosomal protein S4e
 IPR002942  RNA-binding S4 domain
 IPR005824  KOW
 IPR013843  Ribosomal protein S4e, N-terminal
 IPR013845  Ribosomal protein S4e, central region
 IPR018199  Ribosomal protein S4e, N-terminal, conserved site
 IPR032277  40S ribosomal protein S4, C-terminal domain
 IPR036986  RNA-binding S4 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006412 translation IEA
 biological_processGO:0006413 translational initiation TAS
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS
 biological_processGO:0007275 multicellular organism development IMP
 biological_processGO:0019083 viral transcription TAS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus HDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005844 polysome IDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit TAS
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0019843 rRNA binding IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
Peptide chain elongation
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Selenocysteine synthesis
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Eukaryotic Translation Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr