ENSG00000131263


Homo sapiens

Features
Gene ID: ENSG00000131263
  
Biological name :RLIM
  
Synonyms : Q9NVW2 / ring finger protein, LIM domain interacting / RLIM
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: q13.2
Gene start: 74585217
Gene end: 74614617
  
Corresponding Affymetrix probe sets: 222815_at (Human Genome U133 Plus 2.0 Array)   225416_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000253571
Ensembl peptide - ENSP00000328059
NCBI entrez gene - 51132     See in Manteia.
OMIM - 300379
RefSeq - NM_016120
RefSeq - NM_183353
RefSeq Peptide - NP_057204
RefSeq Peptide - NP_899196
swissprot - Q9NVW2
Ensembl - ENSG00000131263
  
Related genetic diseases (OMIM): 300978 - Mental retardation, X-linked 61, 300978
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rlimENSDARG00000079306Danio rerio
 RLIMENSGALG00000007750Gallus gallus
 RlimENSMUSG00000056537Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RNF6 / Q9Y252 / ring finger protein 6ENSG0000012787046
RNF38 / Q9H0F5 / ring finger protein 38ENSG0000013707515
RNF44 / Q7L0R7 / ring finger protein 44ENSG0000014608313


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000209 protein polyubiquitination TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process ISS
 biological_processGO:0016567 protein ubiquitination ISS
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 biological_processGO:0043433 negative regulation of DNA-binding transcription factor activity IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated NAS
 biological_processGO:0060816 random inactivation of X chromosome IDA
 biological_processGO:1900095 regulation of dosage compensation by inactivation of X chromosome IBA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0017053 transcriptional repressor complex NAS
 molecular_functionGO:0003714 transcription corepressor activity NAS
 molecular_functionGO:0004842 ubiquitin-protein transferase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000448 Prominent nose 
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 HP:0000708 Behavioural/Psychiatric Abnormality 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0002213 Fine hair 
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 HP:0002465 Poor speech 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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