ENSG00000134504


Homo sapiens

Features
Gene ID: ENSG00000134504
  
Biological name :KCTD1
  
Synonyms : KCTD1 / potassium channel tetramerization domain containing 1 / Q719H9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: -1
Band: q11.2
Gene start: 26454910
Gene end: 26657401
  
Corresponding Affymetrix probe sets: 226245_at (Human Genome U133 Plus 2.0 Array)   226246_at (Human Genome U133 Plus 2.0 Array)   229183_at (Human Genome U133 Plus 2.0 Array)   236057_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000464170
Ensembl peptide - ENSP00000463608
Ensembl peptide - ENSP00000464261
Ensembl peptide - ENSP00000314831
Ensembl peptide - ENSP00000384367
Ensembl peptide - ENSP00000408405
Ensembl peptide - ENSP00000462470
Ensembl peptide - ENSP00000463041
NCBI entrez gene - 284252     See in Manteia.
OMIM - 613420
RefSeq - XM_017025708
RefSeq - NM_001136205
RefSeq - NM_001142730
RefSeq - NM_001258221
RefSeq - NM_001258222
RefSeq - NM_198991
RefSeq Peptide - NP_001338372
RefSeq Peptide - NP_001129677
RefSeq Peptide - NP_001136202
RefSeq Peptide - NP_001245150
RefSeq Peptide - NP_001245151
RefSeq Peptide - NP_945342
swissprot - Q719H9
swissprot - A0A024RC45
swissprot - J3KSG1
swissprot - J3QLL6
swissprot - J3QRK1
Ensembl - ENSG00000134504
  
Related genetic diseases (OMIM): 181270 - Scalp-ear-nipple syndrome, 181270
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 kctd1ENSDARG00000074056Danio rerio
 KCTD1ENSGALG00000015124Gallus gallus
 Kctd1ENSMUSG00000036225Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KCTD15 / Q96SI1 / potassium channel tetramerization domain containing 15ENSG0000015388580
KCTD6 / Q8NC69 / potassium channel tetramerization domain containing 6ENSG0000016830126
KCTD21 / Q4G0X4 / potassium channel tetramerization domain containing 21ENSG0000018899725
KCTD4 / Q8WVF5 / potassium channel tetramerization domain containing 4ENSG0000018033223
KCTD16 / Q68DU8 / potassium channel tetramerization domain containing 16ENSG0000018377523
KCTD8 / Q6ZWB6 / potassium channel tetramerization domain containing 8ENSG0000018378321
KCTD12 / Q96CX2 / potassium channel tetramerization domain containing 12ENSG0000017869521
KCNRG / Q8N5I3 / potassium channel regulatorENSG0000019855321
KCTD11 / Q693B1 / potassium channel tetramerization domain containing 11ENSG0000021385918


Protein motifs (from Interpro)
Interpro ID Name
 IPR000210  BTB/POZ domain
 IPR003131  Potassium channel tetramerisation-type BTB domain
 IPR011333  SKP1/BTB/POZ domain superfamily
 IPR021893  Protein of unknown function DUF3504


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0051260 protein homooligomerization IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0003714 transcription corepressor activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Negative regulation of activity of TFAP2 (AP-2) family transcription factors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000073 Ureteral duplication "A developmental anomaly characterized by the presence of two, instead of one, ureter connecting a kidney to the bladder." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000089 Renal hypoplasia 
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 HP:0000104 Renal agenesis 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000378 Cup-shaped ears "Small auricles that grow forward over the meatus (ear canal)." [HPO:curators]
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 HP:0000385 Hypoplastic ear lobes 
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 HP:0000411 Protruding ears 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000519 Congenital cataract "A congenital `cataract` (HP:0000518)." [HPO:probinson]
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000601 Hypotelorism 
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000625 Eyelid, cleft "A short discontinuity of the margin of the lower or upper eyelid." [pmid:19125427]
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000765 Abnormality of the thorax "Any abnormality of the thorax (the region of the body formed by the sternum, the thoracic vertebrae and the ribs)." [HPO:curators]
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 HP:0000818 Endocrine abnormality 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000951 Abnormality of the skin "An abnormality of the `skin` (FMA:7163)." [HPO:probinson]
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001595 Hair abnormality 
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 HP:0001597 Abnormality of the nails "Abnormality of the fingernails or toenails." [HPO:curators]
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 HP:0001965 Abnormality of the scalp "Abnormality of the scalp of the head, which can be described as having the following five layers: 1) skin and head hair; 2) connective tissue; 3) the aponeurosis (a layer of dense fibrous tissue); 4) loose areolar connective tissue; and 5) the periosteum of the skull bones." [HPO:curators]
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 HP:0002000 Columella, short "Reduced distance from the anterior border of the naris to the subnasale." [pmid:19152422]
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 HP:0002164 Nail dysplasia 
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 HP:0002213 Fine hair 
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005580 Duplication of renal pelvis 
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 HP:0006349 Absence of permanent teeth "A congenital defect characterized by the absence of one or more permanent teeth, including oligodontia, hypodonita, and adontia of the permanent dentition." [HPO:probinson]
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 HP:0006709 Aplasia/Hypoplasia of the nipples 
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 HP:0008070 Sparse hair 
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 HP:0008551 Underdeveloped ears 
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 HP:0009738 Abnormal antihelix "An abnormal form of the antihelix, which is the curved prominence of cartilage, parallel with and in front of the helix, and which divides into the crura antihelicis, between which is a triangular depression, the fossa triangularis." [HPO:curators]
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 HP:0011251 Underdeveloped antitragus "Reduction in the anterosuperior prominence of the area between the bottom of the incisura and the inner margin of the antihelix." [HPO:probinson, pmid:19152421]
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 HP:0011272 Underdeveloped tragus "Decreased posterolateral protrusion of the tragus." [pmid:19152421]
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 HP:0011939 3-4 finger cutaneous syndactyly "A soft tissue continuity in the A/P axis between fingers 4 and 4." [HPO:probinson]
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 HP:0012330 Pyelonephritis "An inflammation of the `kidney` (FMA:7203) involving the `parenchyma of kidney` (FMA:15574), the renal pelvis (FMA:15575) and the kidney calices." [HPO:probinson]
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 HP:0100540 Palpebral edema 
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 HP:0100651 Diabetes mellitus Type I 
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 HP:0100783 Breast aplasia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000087510 Q92754 / TFAP2C / transcription factor AP-2 gamma  / reaction / complex
 ENSG00000137203 P05549 / TFAP2A / transcription factor AP-2 alpha  / complex / reaction
 ENSG00000008196 Q92481 / TFAP2B / transcription factor AP-2 beta  / reaction / complex






 

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