ENSG00000008196


Homo sapiens

Features
Gene ID: ENSG00000008196
  
Biological name :TFAP2B
  
Synonyms : Q92481 / TFAP2B / transcription factor AP-2 beta
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p12.3
Gene start: 50818723
Gene end: 50847613
  
Corresponding Affymetrix probe sets: 1553394_a_at (Human Genome U133 Plus 2.0 Array)   214451_at (Human Genome U133 Plus 2.0 Array)   215686_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000342252
Ensembl peptide - ENSP00000377265
NCBI entrez gene - 7021     See in Manteia.
OMIM - 601601
RefSeq - XM_017011235
RefSeq - NM_003221
RefSeq - XM_011514837
RefSeq - XM_017011233
RefSeq - XM_017011234
RefSeq Peptide - NP_003212
swissprot - Q92481
swissprot - X6R4Y8
Ensembl - ENSG00000008196
  
Related genetic diseases (OMIM): 169100 - Char syndrome, 169100
  617035 - Patent ductus arteriosus 2, 617035

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tfap2bENSDARG00000012667Danio rerio
 TFAP2BENSGALG00000016680Gallus gallus
 Q61313ENSMUSG00000025927Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P05549 / TFAP2A / transcription factor AP-2 alphaENSG0000013720366
Q6VUC0 / TFAP2E / transcription factor AP-2 epsilonENSG0000011681960
Q92754 / TFAP2C / transcription factor AP-2 gammaENSG0000008751057
Q7Z6R9 / TFAP2D / transcription factor AP-2 deltaENSG0000000819748


Protein motifs (from Interpro)
Interpro ID Name
 IPR004979  Transcription factor AP-2
 IPR008122  Transcription factor AP-2 beta
 IPR013854  Transcription factor AP-2, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II TAS
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0003091 renal water homeostasis IEA
 biological_processGO:0006006 glucose metabolic process IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IDA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007423 sensory organ development IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0008285 negative regulation of cell proliferation IDA
 biological_processGO:0010226 response to lithium ion IEA
 biological_processGO:0010842 retina layer formation IEP
 biological_processGO:0010960 magnesium ion homeostasis IEA
 biological_processGO:0030510 regulation of BMP signaling pathway IEA
 biological_processGO:0035136 forelimb morphogenesis IEA
 biological_processGO:0035137 hindlimb morphogenesis IEA
 biological_processGO:0035810 positive regulation of urine volume IEA
 biological_processGO:0035909 aorta morphogenesis IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0042593 glucose homeostasis IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process ISS
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0043525 positive regulation of neuron apoptotic process IDA
 biological_processGO:0043588 skin development IEA
 biological_processGO:0045444 fat cell differentiation IEA
 biological_processGO:0045595 regulation of cell differentiation IDA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048485 sympathetic nervous system development IEA
 biological_processGO:0050796 regulation of insulin secretion IMP
 biological_processGO:0055062 phosphate ion homeostasis IEA
 biological_processGO:0055074 calcium ion homeostasis IEA
 biological_processGO:0055075 potassium ion homeostasis IEA
 biological_processGO:0055078 sodium ion homeostasis IEA
 biological_processGO:0072017 distal tubule development IEA
 biological_processGO:0072044 collecting duct development IEA
 biological_processGO:0072210 metanephric nephron development IEA
 biological_processGO:0097070 ductus arteriosus closure IEA
 biological_processGO:0097275 cellular ammonia homeostasis IEA
 biological_processGO:0097276 cellular creatinine homeostasis IEA
 biological_processGO:0097277 cellular urea homeostasis IEA
 cellular_componentGO:0005634 nucleus IC
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IDA
 molecular_functionGO:0000983 transcription factor activity, RNA polymerase II core promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001158 enhancer sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity NAS
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0003714 transcription corepressor activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0046982 protein heterodimerization activity IPI
 molecular_functionGO:0046983 protein dimerization activity IDA


Pathways (from Reactome)
Pathway description
SUMOylation of transcription factors
Negative regulation of activity of TFAP2 (AP-2) family transcription factors
Activation of the TFAP2 (AP-2) family of transcription factors
TFAP2 (AP-2) family regulates transcription of growth factors and their receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000207 Triangular mouth 
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 HP:0000232 Everted lower lip 
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 HP:0000269 Prominent occiput 
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000455 Broad nasal tip 
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 HP:0000457 Flat nose 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000545 Myopia 
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 HP:0000574 Thick eyebrows 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002553 Arched eyebrows 
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 HP:0002558 Supernumerary nipples 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004218 Symphalangism of the 5th finger "Fusion of two or more bones of the 5th finger." [HPO:curators]
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 HP:0004220 Hypoplastic/small middle phalanx of the 5th finger "Absence or underdevelopment (hypoplasia) of the middle phalanx of the little (5th) finger." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0006159 Central polydactyly (hands) 
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 HP:0006335 Delayed loss of deciduous teeth 
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 HP:0008498 No permanent dentition 
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 HP:0009244 Symphalangism affecting the distal phalanx of the 5th finger "Fusion of the distal phalanx of the 5th finger with another bone." [HPO:curators]
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 HP:0010112 Central polydactyly (feet) 
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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 HP:0025234 Parasomnia "An undesirable physical event or experience that occur during entry into sleep, during sleep, or during arousal from sleep." [PMID:27647645]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000087510 Q92754 / TFAP2C / transcription factor AP-2 gamma  / complex / reaction
 ENSG00000005339 CREBBP / Q92793 / CREB binding protein  / complex / reaction
 ENSG00000100393 EP300 / Q09472 / E1A binding protein p300  / reaction / complex
 ENSG00000116030 SUMO1 / P63165 / small ubiquitin-like modifier 1  / reaction / complex
 ENSG00000127337 O95619 / YEATS4 / YEATS domain containing 4  / complex / reaction
 ENSG00000134504 KCTD1 / Q719H9 / potassium channel tetramerization domain containing 1  / reaction / complex
 ENSG00000137203 P05549 / TFAP2A / transcription factor AP-2 alpha  / complex / reaction
 ENSG00000153885 KCTD15 / Q96SI1 / potassium channel tetramerization domain containing 15  / complex / reaction
 ENSG00000008196 Q92481 / TFAP2B / transcription factor AP-2 beta  / reaction / complex
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction
 ENSG00000164442 CITED2 / Q99967 / Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2  / complex / reaction
 ENSG00000179862 CITED4 / Q96RK1 / Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4  / complex / reaction






 

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