ENSG00000138002


Homo sapiens

Features
Gene ID: ENSG00000138002
  
Biological name :IFT172
  
Synonyms : IFT172 / intraflagellar transport 172 / Q9UG01
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p23.3
Gene start: 27444371
Gene end: 27489789
  
Corresponding Affymetrix probe sets: 226324_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000427255
Ensembl peptide - ENSP00000404082
Ensembl peptide - ENSP00000407408
Ensembl peptide - ENSP00000260570
Ensembl peptide - ENSP00000352443
Ensembl peptide - ENSP00000398633
Ensembl peptide - ENSP00000399017
NCBI entrez gene - 26160     See in Manteia.
OMIM - 607386
RefSeq - XM_017003795
RefSeq - XM_011532759
RefSeq - XM_011532760
RefSeq - XM_017003790
RefSeq - XM_017003791
RefSeq - XM_017003792
RefSeq - XM_017003793
RefSeq - XM_017003794
RefSeq - NM_015662
RefSeq - XM_005264254
RefSeq - XM_006711986
RefSeq - XM_006711987
RefSeq - XM_011532757
RefSeq - XM_011532758
RefSeq Peptide - NP_056477
swissprot - H7C161
swissprot - H7C186
swissprot - H0YAI8
swissprot - F5GZ56
swissprot - Q9UG01
swissprot - H7C252
Ensembl - ENSG00000138002
  
Related genetic diseases (OMIM): 615630 - Short-rib thoracic dysplasia 10 with or without polydactyly, 615630
  616394 - Retinitis pigmentosa 71, 616394
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ift172ENSDARG00000041870Danio rerio
 IFT172ENSGALG00000016509Gallus gallus
 Ift172ENSMUSG00000038564Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016024  Armadillo-type fold
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001841 neural tube formation IEA
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0001947 heart looping IEA
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007368 determination of left/right symmetry IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0008544 epidermis development IEA
 biological_processGO:0008589 regulation of smoothened signaling pathway IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0016485 protein processing IEA
 biological_processGO:0021522 spinal cord motor neuron differentiation IEA
 biological_processGO:0021915 neural tube development IEA
 biological_processGO:0031122 cytoplasmic microtubule organization IEA
 biological_processGO:0035735 intraciliary transport involved in cilium assembly TAS
 biological_processGO:0045880 positive regulation of smoothened signaling pathway IEA
 biological_processGO:0050680 negative regulation of epithelial cell proliferation IEA
 biological_processGO:0060021 roof of mouth development IEA
 biological_processGO:0060173 limb development IEA
 biological_processGO:0060271 cilium assembly ISS
 biological_processGO:0060348 bone development IEA
 biological_processGO:0061525 hindgut development IEA
 biological_processGO:0070986 left/right axis specification IEA
 biological_processGO:1905515 non-motile cilium assembly IEA
 cellular_componentGO:0005929 cilium TAS
 cellular_componentGO:0005930 axoneme IBA
 cellular_componentGO:0030992 intraciliary transport particle B IBA
 cellular_componentGO:0036064 ciliary basal body IBA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0097225 sperm midpiece IEA
 cellular_componentGO:0097228 sperm principal piece IEA
 cellular_componentGO:0097542 ciliary tip TAS
 cellular_componentGO:0097598 sperm cytoplasmic droplet IEA
 cellular_componentGO:1903561 extracellular vesicle HDA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000083 Renal failure 
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 HP:0000090 Nephronophthisis 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000202 Cleft lip/palate 
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 HP:0000238 Hydrocephalus 
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 HP:0000365 Hearing loss 
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000543 Pale optic disks 
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 HP:0000546 Retinal degeneration 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000657 Oculomotor apraxia 
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 HP:0000662 Night blindness 
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 HP:0000750 Impaired language development 
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 HP:0000766 Abnormality of the sternum 
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 HP:0000772 Abnormality of the ribs 
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 HP:0000773 Short ribs 
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 HP:0000774 Narrow chest 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000833 Glucose intolerance 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000889 Abnormality of the clavicles "Any abnormality of the clavicles (collar bones)." [HPO:curators]
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000987 Scarring 
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 HP:0001156 Brachydactyly 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001320 Cerebellar vermis hypoplasia 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001392 Abnormality of the liver 
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 HP:0001395 Hepatic fibrosis 
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 HP:0001396 Cholestasis 
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 HP:0001399 Hepatic failure 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001591 Bell-shaped chest 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001733 Pancreatitis 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001830 Postaxial polydactyly (feet) "Polydactyly of the foot most commonly refers to the presence of six toes on one foot. Postaxial polydactyly affects the lateral ray and the duplication may range from a well-formed articulated digit to a rudimentary digit." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002119 Ventriculomegaly 
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 HP:0002167 Neurological speech impairment 
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002644 Abnormality of the pelvis "An abnormality of the bony pelvis (pelvic girdle); which is a ring of bones connecting the vertebral column to the femurs." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002857 Genu valgum 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0002983 Micromelia 
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 HP:0003026 Short long bones 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005257 Thoracic hypoplasia 
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006644 Thoracic dysplasia 
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 HP:0006703 Aplasia/Hypoplasia of the lungs 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007843 Attenuation of retinal blood vessels 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008724 Hypoplastic ovary 
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 HP:0008736 Hypoplasia of penis 
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 HP:0008872 Feeding problems in infancy 
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 HP:0010230 Cone-shaped epiphyses of the phalanges of the hand "A cone-shaped appearance of the epiphyses of the fingers of the hand, producing a ball-in-a-socket appearance. The related entity angel-shaped epiphysis refers to a pronounced cone-shaped epiphysis in combination with a pseudoepiphysis at the distal end of a phalanx." [HPO:curators]
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 HP:0010306 Short thorax "Reduced inferior to superior extent of the thorax." [HPO:curators]
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 HP:0010579 Cone-shaped epiphyses 
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 HP:0010747 Medial flaring of the eyebrow "An abnormal distribution of eyebrow hair growth in the medial direction." [HPO:probinson]
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 HP:0012622 Chronic kidney disease "Functional anomaly of the kidney persisting for at least three months." [Eurenomics:ewuehl]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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