ENSGALG00000016509


Gallus gallus

Features
Gene ID: ENSGALG00000016509
  
Biological name :IFT172
  
Synonyms : IFT172 / intraflagellar transport 172
  
Possible biological names infered from orthology : Intraflagellar transport / Q6VH22 / Q9UG01
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 104821709
Gene end: 104855287
  
Corresponding Affymetrix probe sets: Gga.7147.1.S1_at (Chicken Array)   GgaAffx.24986.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026583
Ensembl peptide - ENSGALP00000062515
Ensembl peptide - ENSGALP00000045002
NCBI entrez gene - 421983     See in Manteia.
RefSeq - XM_015285006
swissprot - E1BVT1
swissprot - A0A1L1RUL7
swissprot - A0A1D5NXA8
Ensembl - ENSGALG00000016509
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ift172ENSDARG00000041870Danio rerio
 IFT172ENSG00000138002Homo sapiens
 Ift172ENSMUSG00000038564Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011044  Quinoprotein amine dehydrogenase, beta chain-like
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016024  Armadillo-type fold
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001841 neural tube formation IEA
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0001947 heart looping IEA
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0007368 determination of left/right symmetry IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0008544 epidermis development IEA
 biological_processGO:0008589 regulation of smoothened signaling pathway IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0016485 protein processing IEA
 biological_processGO:0021522 spinal cord motor neuron differentiation IEA
 biological_processGO:0021915 neural tube development IEA
 biological_processGO:0031122 cytoplasmic microtubule organization IEA
 biological_processGO:0045880 positive regulation of smoothened signaling pathway IEA
 biological_processGO:0050680 negative regulation of epithelial cell proliferation IEA
 biological_processGO:0060021 roof of mouth development IEA
 biological_processGO:0060173 limb development IEA
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:0060348 bone development IEA
 biological_processGO:0061525 hindgut development IEA
 biological_processGO:0070986 left/right axis specification IEA
 biological_processGO:1905515 non-motile cilium assembly IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0005930 axoneme IBA
 cellular_componentGO:0030992 intraciliary transport particle B IEA
 cellular_componentGO:0036064 ciliary basal body IBA
 cellular_componentGO:0097225 sperm midpiece IEA
 cellular_componentGO:0097228 sperm principal piece IEA
 cellular_componentGO:0097598 sperm cytoplasmic droplet IEA


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport
Hedgehog on state


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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