ENSG00000138036


Homo sapiens

Features
Gene ID: ENSG00000138036
  
Biological name :DYNC2LI1
  
Synonyms : DYNC2LI1 / dynein cytoplasmic 2 light intermediate chain 1 / Q8TCX1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p21
Gene start: 43774039
Gene end: 43810010
  
Corresponding Affymetrix probe sets: 1554324_s_at (Human Genome U133 Plus 2.0 Array)   203762_s_at (Human Genome U133 Plus 2.0 Array)   203763_at (Human Genome U133 Plus 2.0 Array)   241757_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000385738
Ensembl peptide - ENSP00000474032
Ensembl peptide - ENSP00000430525
Ensembl peptide - ENSP00000430356
Ensembl peptide - ENSP00000428082
Ensembl peptide - ENSP00000260605
Ensembl peptide - ENSP00000367850
Ensembl peptide - ENSP00000381804
NCBI entrez gene - 51626     See in Manteia.
OMIM - 617083
RefSeq - XM_005264365
RefSeq - NM_001193464
RefSeq - NM_015522
RefSeq - NM_016008
RefSeq - XM_005264364
RefSeq Peptide - NP_056337
RefSeq Peptide - NP_001180393
RefSeq Peptide - NP_057092
swissprot - E5RJK4
swissprot - H7BYC8
swissprot - E5RFM8
swissprot - E5RK97
swissprot - Q8TCX1
Ensembl - ENSG00000138036
  
Related genetic diseases (OMIM): 617088 - Short-rib thoracic dysplasia 15 with polydactyly, 617088
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dync2li1ENSDARG00000039770Danio rerio
 DYNC2LI1ENSGALG00000009954Gallus gallus
 Q8K0T2ENSMUSG00000024253Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR022780  Dynein family light intermediate chain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007368 determination of left/right symmetry IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0035721 intraciliary retrograde transport IBA
 biological_processGO:0035735 intraciliary transport involved in cilium assembly IMP
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:1902017 regulation of cilium assembly IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005868 cytoplasmic dynein complex ISS
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0005881 cytoplasmic microtubule ISS
 cellular_componentGO:0005929 cilium ISS
 cellular_componentGO:0005930 axoneme IEA
 cellular_componentGO:0030286 dynein complex IEA
 cellular_componentGO:0030990 intraciliary transport particle IEA
 cellular_componentGO:0031514 motile cilium IEA
 cellular_componentGO:0035869 ciliary transition zone IDA
 cellular_componentGO:0036064 ciliary basal body ISS
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0045177 apical part of cell IEA
 cellular_componentGO:0097542 ciliary tip TAS
 molecular_functionGO:0003774 motor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008569 ATP-dependent microtubule motor activity, minus-end-directed IDA
 molecular_functionGO:0045504 dynein heavy chain binding IEA


Pathways (from Reactome)
Pathway description
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000008 Abnormality of female internal genitalia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000039 Epispadias "Displacement of the urethral opening on the dorsal (superior) surface of the penis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000072 Hydroureter "The distention of the ureter with urine." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000090 Nephronophthisis 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000190 Frenular abnormality "An abnormality of the lingual frenulum, that is of the small fold of mucous membrane that attaches the tongue to the floor of the mouth." [HPO:probinson]
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 HP:0000233 Thin vermillion border 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000691 Microdontia 
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 HP:0000766 Abnormality of the sternum 
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 HP:0000772 Abnormality of the ribs 
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 HP:0000773 Short ribs 
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 HP:0000774 Narrow chest 
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 HP:0000888 Short, horizontal ribs 
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 HP:0000889 Abnormality of the clavicles "Any abnormality of the clavicles (collar bones)." [HPO:curators]
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0001156 Brachydactyly 
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 HP:0001161 Polydactyly (hands) 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001241 Capitate-hamate fusion 
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 HP:0001249 Mental retardation 
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 HP:0001392 Abnormality of the liver 
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001561 Polyhydramnios 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001654 Abnormality of the heart valves "An abnormality of a `Cardiac valve` (FMA:7110)." [HPO:probinson]
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 HP:0001696 Situs inversus "A left-right reversal (or "mirror reflection") of the anatomical location of the major thoracic and abdominal organs." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0001829 Polydactyly (feet) 
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 HP:0001830 Postaxial polydactyly (feet) "Polydactyly of the foot most commonly refers to the presence of six toes on one foot. Postaxial polydactyly affects the lateral ray and the duplication may range from a well-formed articulated digit to a rudimentary digit." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002097 Emphysema 
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 HP:0002164 Nail dysplasia 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002488 Acute leukemia 
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 HP:0002644 Abnormality of the pelvis "An abnormality of the bony pelvis (pelvic girdle); which is a ring of bones connecting the vertebral column to the femurs." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002857 Genu valgum 
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 HP:0002967 Cubitus valgus 
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 HP:0002983 Micromelia 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005048 fusion of carpal bones, especially capitate and hamate 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005561 Generalized abnormality of the bone marrow 
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 HP:0006695 Tricuspid and mitral valves are replaced by a single inlet valve 
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 HP:0006703 Aplasia/Hypoplasia of the lungs 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0008872 Feeding problems in infancy 
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 HP:0008921 Neonatal short-limbed dwarfism 
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0010306 Short thorax "Reduced inferior to superior extent of the thorax." [HPO:curators]
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 HP:0010579 Cone-shaped epiphyses 
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 HP:0011065 Conical incisor "An abnormal `conical` (PATO:0002021) morphology of the `incisor tooth` (FMA:12823)." [HPO:ibailleulforestier]
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 HP:0011362 Abnormal hair quantity "An abnormal amount of hair." [DDD:cmoss]
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 HP:0011830 Abnormality of oral mucosa "Abnormality of the `oral mucosa` (FMA:59660)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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