ENSG00000138079


Homo sapiens

Features
Gene ID: ENSG00000138079
  
Biological name :SLC3A1
  
Synonyms : Q07837 / SLC3A1 / solute carrier family 3 member 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p21
Gene start: 44275458
Gene end: 44321494
  
Corresponding Affymetrix probe sets: 205799_s_at (Human Genome U133 Plus 2.0 Array)   239667_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000386709
Ensembl peptide - ENSP00000386852
Ensembl peptide - ENSP00000483618
Ensembl peptide - ENSP00000391642
Ensembl peptide - ENSP00000387337
Ensembl peptide - ENSP00000387308
Ensembl peptide - ENSP00000386954
Ensembl peptide - ENSP00000260649
Ensembl peptide - ENSP00000386620
Ensembl peptide - ENSP00000386677
NCBI entrez gene - 6519     See in Manteia.
OMIM - 104614
RefSeq - NM_000341
RefSeq - XM_011533047
RefSeq Peptide - NP_000332
swissprot - A0A0S2Z4E1
swissprot - C9JBK3
swissprot - Q07837
swissprot - A0A087X0R9
swissprot - B8ZZP2
swissprot - B8ZZK1
Ensembl - ENSG00000138079
  
Related genetic diseases (OMIM): 220100 - Cystinuria, 220100
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc3a1ENSDARG00000017165Danio rerio
 SLC3A1ENSGALG00000009973Gallus gallus
 Q91WV7ENSMUSG00000024131Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P08195 / SLC3A2 / solute carrier family 3 member 2ENSG0000016800319


Protein motifs (from Interpro)
Interpro ID Name
 IPR006047  Glycosyl hydrolase, family 13, catalytic domain
 IPR017853  Glycoside hydrolase superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003333 amino acid transmembrane transport IEA
 biological_processGO:0005975 carbohydrate metabolic process IEA
 biological_processGO:0006520 cellular amino acid metabolic process TAS
 biological_processGO:0006865 amino acid transport TAS
 biological_processGO:0015802 basic amino acid transport TAS
 biological_processGO:0015811 L-cystine transport TAS
 biological_processGO:1990822 basic amino acid transmembrane transport IEA
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0005774 vacuolar membrane IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031526 brush border membrane IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015171 amino acid transmembrane transporter activity TAS
 molecular_functionGO:0015174 basic amino acid transmembrane transporter activity TAS
 molecular_functionGO:0015184 L-cystine transmembrane transporter activity TAS
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
Amino acid transport across the plasma membrane
Defective SLC3A1 causes cystinuria (CSNU)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000268 Dolichocephaly 
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 HP:0000278 Retrognathia 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000707 Neurological abnormality "An abnormality of the central or peripheral nervous system." [HPO:curators]
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 HP:0000787 Kidney stones 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001510 Growth retardation 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001611 Nasal speech 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002342 Mental retardation, moderate "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 35-49." [HPO:curators]
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 HP:0002591 Polyphagia 
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 HP:0002901 Hypocalcemia "A level of blood calcium that is lower than normal." [HPO:curators]
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003131 Cystinuria 
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 HP:0003268 Argininuria 
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 HP:0003297 Hyperlysinuria 
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 HP:0003532 Ornithinuria 
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 HP:0003828 Variable expressivity 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0200125 Mitochondrial respiratory chain defects 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000021488 P82251 / SLC7A9 / solute carrier family 7 member 9  / complex






 

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