ENSG00000140463


Homo sapiens

Features
Gene ID: ENSG00000140463
  
Biological name :BBS4
  
Synonyms : Bardet-Biedl syndrome 4 / BBS4 / Q96RK4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q24.1
Gene start: 72686179
Gene end: 72738476
  
Corresponding Affymetrix probe sets: 212744_at (Human Genome U133 Plus 2.0 Array)   212745_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000457795
Ensembl peptide - ENSP00000457753
Ensembl peptide - ENSP00000457958
Ensembl peptide - ENSP00000268057
Ensembl peptide - ENSP00000378631
Ensembl peptide - ENSP00000454718
Ensembl peptide - ENSP00000455412
Ensembl peptide - ENSP00000455958
Ensembl peptide - ENSP00000456463
Ensembl peptide - ENSP00000456664
Ensembl peptide - ENSP00000456758
Ensembl peptide - ENSP00000456759
Ensembl peptide - ENSP00000457479
NCBI entrez gene - 585     See in Manteia.
OMIM - 600374
RefSeq - XM_017022454
RefSeq - NM_001252678
RefSeq - NM_001320665
RefSeq - NM_033028
RefSeq - XM_011521848
RefSeq - XM_011521849
RefSeq - XM_011521851
RefSeq - XM_017022450
RefSeq - XM_017022451
RefSeq - XM_017022452
RefSeq - XM_017022453
RefSeq Peptide - NP_001307594
RefSeq Peptide - NP_001239607
RefSeq Peptide - NP_149017
swissprot - H3BN76
swissprot - H3BPP7
swissprot - H3BQV7
swissprot - H3BRY9
swissprot - H3BSE2
swissprot - H3BSL2
swissprot - H3BU58
swissprot - H3BUQ7
swissprot - H3BUU1
swissprot - H3BV56
swissprot - Q96RK4
swissprot - A0A0S2Z3A9
Ensembl - ENSG00000140463
  
Related genetic diseases (OMIM): 615982 - Bardet-Biedl syndrome 4, 615982
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 bbs4ENSDARG00000063522Danio rerio
 BBS4ENSGALG00000001798Gallus gallus
 Bbs4ENSMUSG00000025235Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TTC8 / Q8TAM2 / tetratricopeptide repeat domain 8ENSG0000016553317


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000226 microtubule cytoskeleton organization ISS
 biological_processGO:0000281 mitotic cytokinesis IMP
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0001843 neural tube closure ISS
 biological_processGO:0001895 retina homeostasis ISS
 biological_processGO:0001947 heart looping ISS
 biological_processGO:0003085 negative regulation of systemic arterial blood pressure IEA
 biological_processGO:0007098 centrosome cycle IMP
 biological_processGO:0007286 spermatid development ISS
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007608 sensory perception of smell ISS
 biological_processGO:0008104 protein localization IEA
 biological_processGO:0010629 negative regulation of gene expression IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016358 dendrite development ISS
 biological_processGO:0019216 regulation of lipid metabolic process ISS
 biological_processGO:0021591 ventricular system development IEA
 biological_processGO:0021756 striatum development ISS
 biological_processGO:0021766 hippocampus development ISS
 biological_processGO:0021987 cerebral cortex development ISS
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0030534 adult behavior ISS
 biological_processGO:0030837 negative regulation of actin filament polymerization IEA
 biological_processGO:0032402 melanosome transport ISS
 biological_processGO:0032465 regulation of cytokinesis IMP
 biological_processGO:0033210 leptin-mediated signaling pathway IEA
 biological_processGO:0033365 protein localization to organelle ISS
 biological_processGO:0034260 negative regulation of GTPase activity IEA
 biological_processGO:0034454 microtubule anchoring at centrosome IMP
 biological_processGO:0035176 social behavior IEA
 biological_processGO:0035845 photoreceptor cell outer segment organization IEA
 biological_processGO:0038108 negative regulation of appetite by leptin-mediated signaling pathway ISS
 biological_processGO:0040018 positive regulation of multicellular organism growth IEA
 biological_processGO:0044321 response to leptin IEA
 biological_processGO:0045444 fat cell differentiation ISS
 biological_processGO:0045494 photoreceptor cell maintenance ISS
 biological_processGO:0045724 positive regulation of cilium assembly ISS
 biological_processGO:0046548 retinal rod cell development ISS
 biological_processGO:0046907 intracellular transport ISS
 biological_processGO:0048854 brain morphogenesis ISS
 biological_processGO:0050893 sensory processing TAS
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0051457 maintenance of protein location in nucleus IGI
 biological_processGO:0051492 regulation of stress fiber assembly IEA
 biological_processGO:0060271 cilium assembly ISS
 biological_processGO:0060296 regulation of cilium beat frequency involved in ciliary motility ISS
 biological_processGO:0060324 face development IEA
 biological_processGO:0060613 fat pad development IEA
 biological_processGO:0061512 protein localization to cilium IMP
 biological_processGO:0071539 protein localization to centrosome IMP
 biological_processGO:1902855 regulation of non-motile cilium assembly IEA
 biological_processGO:1903546 protein localization to photoreceptor outer segment IEA
 biological_processGO:1905515 non-motile cilium assembly ISS
 cellular_componentGO:0000242 pericentriolar material IDA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0001917 photoreceptor inner segment IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005814 centriole IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031514 motile cilium IDA
 cellular_componentGO:0032391 photoreceptor connecting cilium IEA
 cellular_componentGO:0034451 centriolar satellite IDA
 cellular_componentGO:0034464 BBSome IDA
 cellular_componentGO:0035869 ciliary transition zone IDA
 cellular_componentGO:0036064 ciliary basal body IDA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0060170 ciliary membrane IDA
 cellular_componentGO:0097730 non-motile cilium IDA
 molecular_functionGO:0001103 RNA polymerase II repressing transcription factor binding IPI
 molecular_functionGO:0003777 microtubule motor activity IMP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0034452 dynactin binding IDA
 molecular_functionGO:0043014 alpha-tubulin binding IDA
 molecular_functionGO:0048487 beta-tubulin binding IDA


Pathways (from Reactome)
Pathway description
BBSome-mediated cargo-targeting to cilium


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000077 Abnormality of the kidneys "An abnormality of the kidneys, the paired organs whose primary function is the production of urine." [HPO:curators]
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 HP:0000100 Nephrotic syndrome 
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 HP:0000107 Renal cysts 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000137 Abnormality of the ovaries 
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 HP:0000148 Vaginal atresia 
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000426 Prominent nasal bridge 
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 HP:0000470 Short neck 
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 HP:0000483 Astigmatism 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000545 Myopia 
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 HP:0000546 Retinal degeneration 
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000678 Dental overcrowding 
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 HP:0000750 Impaired language development 
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 HP:0000819 Diabetes mellitus 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001080 Biliary tract abnormality 
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 HP:0001156 Brachydactyly 
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001395 Hepatic fibrosis 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001712 Left ventricular hypertrophy 
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 HP:0001769 Broad feet "Increased width of the feet." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001829 Polydactyly (feet) 
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 HP:0002099 Asthma "Asthma is characterized by increased responsiveness of the tracheobronchial tree to multiple stimuli, leading to narrowing of the air passages with resultant dyspnea, cough, and wheezing." [HPO:curators]
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 HP:0002141 Gait imbalance 
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 HP:0002167 Neurological speech impairment 
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002370 Poor coordination 
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003241 Genital hypoplasia 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0008724 Hypoplastic ovary 
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 HP:0008734 Decreased testicular size 
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 HP:0008736 Hypoplasia of penis 
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 HP:0009466 Radial deviation of fingers 
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 HP:0009806 Nephrogenic diabetes insipidus "A form of diabetes insipidus caused by failure of the kidneys to respond to vasopressin (AVP)." [HPO:curators]
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 HP:0010442 Polydactyly 
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 HP:0010747 Medial flaring of the eyebrow "An abnormal distribution of eyebrow hair growth in the medial direction." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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