ENSG00000141485


Homo sapiens

Features
Gene ID: ENSG00000141485
  
Biological name :SLC13A5
  
Synonyms : Q86YT5 / SLC13A5 / solute carrier family 13 member 5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: p13.1
Gene start: 6684713
Gene end: 6713567
  
Corresponding Affymetrix probe sets: 228844_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000461622
Ensembl peptide - ENSP00000460903
Ensembl peptide - ENSP00000461495
Ensembl peptide - ENSP00000293800
Ensembl peptide - ENSP00000370464
Ensembl peptide - ENSP00000406220
Ensembl peptide - ENSP00000459372
Ensembl peptide - ENSP00000460037
NCBI entrez gene - 284111     See in Manteia.
OMIM - 608305
RefSeq - XM_011523795
RefSeq - NM_001143838
RefSeq - NM_001284509
RefSeq - NM_001284510
RefSeq - NM_177550
RefSeq Peptide - NP_001271439
RefSeq Peptide - NP_001137310
RefSeq Peptide - NP_001271438
RefSeq Peptide - NP_808218
swissprot - I3L4X6
swissprot - I3L424
swissprot - Q86YT5
swissprot - I3L2Y7
swissprot - I3L4S9
Ensembl - ENSG00000141485
  
Related genetic diseases (OMIM): 615905 - Epileptic encephalopathy, early infantile, 25, 615905
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc13a5aENSDARG00000077691Danio rerio
 slc13a5bENSDARG00000039999Danio rerio
 SLC13A5ENSGALG00000005995Gallus gallus
 Q67BT3ENSMUSG00000020805Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q13183 / SLC13A2 / solute carrier family 13 member 2ENSG0000000721655
Q8WWT9 / SLC13A3 / solute carrier family 13 member 3ENSG0000015829648
Q9UKG4 / SLC13A4 / solute carrier family 13 member 4ENSG0000016470744
Q9BZW2 / SLC13A1 / solute carrier family 13 member 1ENSG0000008180043


Protein motifs (from Interpro)
Interpro ID Name
 IPR001898  Solute carrier family 13
 IPR031312  Sodium/sulphate symporter, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0006842 tricarboxylic acid transport IEA
 biological_processGO:0015744 succinate transport IEA
 biological_processGO:0015746 citrate transport IDA
 biological_processGO:0035674 tricarboxylic acid transmembrane transport IBA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0071422 succinate transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005215 transporter activity IEA
 molecular_functionGO:0015137 citrate transmembrane transporter activity TAS
 molecular_functionGO:0015141 succinate transmembrane transporter activity IBA
 molecular_functionGO:0015142 tricarboxylic acid transmembrane transporter activity IEA
 molecular_functionGO:0015293 symporter activity IEA
 molecular_functionGO:0017153 sodium:dicarboxylate symporter activity IBA


Pathways (from Reactome)
Pathway description
Sodium-coupled sulphate, di- and tri-carboxylate transporters


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000705 Amelogenesis imperfecta 
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 HP:0000726 Dementia 
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001939 Metabolism abnormality 
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002133 Status epilepticus 
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 HP:0002167 Neurological speech impairment 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002376 Developmental regression 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006286 Yellow-brown discoloration of the teeth 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0031165 Multifocal seizures "Seizures that start from several different areas of the brain (i.e., with multiple ictal onset locations)." [PMID:27091239]
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 HP:0100022 Abnormality of movement "An abnormality of movement with a neurological basis characterized by changes in coordination and speed of voluntary movements." [HPO:probinson]
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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